hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07333026/chunk_1/iprscan-20080502-07333026.nocrc
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Query sequence: KIAA1604
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02854.9.ls MIF4G domain                                   138.9    1.2e-38   1
PF02854.9.fs MIF4G domain                                   137.1    4.4e-38   1
PF02847.7.fs MA3 domain                                      93.3    1.5e-27   1
PF02847.7.ls MA3 domain                                      95.2    1.8e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02854.9.fs   1/1     192   375 ..     1   230 []   137.1  4.4e-38
PF02854.9.ls   1/1     192   375 ..     1   230 []   138.9  1.2e-38
PF02847.7.fs   1/1     484   590 ..     1   116 []    93.3  1.5e-27
PF02847.7.ls   1/1     484   590 ..     1   116 []    95.2  1.8e-25

Alignments of top-scoring domains:
PF02854.9.fs: domain 1 of 1, from 192 to 375: score 137.1, E = 4.4e-38
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                       k++ngl+nk++   +n++ ii+ell++n+ +           ++ l
    KIAA1604   192    KKSINGLINKVN--ISNISiIIQELLQENIVR----------GRGLL 226  

                   lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek
                    +++++++  +p f ++yA+L+a++nsk+p     +g+l l rl+ +F+k
    KIAA1604   227 SRSVLQAQSASPIFTHVYAALVAIINSKFP----QIGELILKRLILNFRK 272  

                   releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl
                             +r+d++ +l   +F ++L+n+ v +e + le l +lle +
    KIAA1604   273 --------GYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERP 314  

                   teedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerlqkil
                   t+          +s+e+++ +L+ +G +L+  ++s++ ++ i+erl++il
    KIAA1604   315 TD----------DSVEVAIGFLKECGLKLT--QVSPRGINAIFERLRNIL 352  

                   lkrdkshvrvesepelssrirfmledlielrknk<-*
                   ++            e+++r+++m+e ++++rk+    
    KIAA1604   353 HE-----------SEIDKRVQYMIEVMFAVRKDG    375  

PF02854.9.ls: domain 1 of 1, from 192 to 375: score 138.9, E = 1.2e-38
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                       k++ngl+nk++   +n++ ii+ell++n+ +           ++ l
    KIAA1604   192    KKSINGLINKVN--ISNISiIIQELLQENIVR----------GRGLL 226  

                   lelifekaveepnfipayArLcalLnsknpgekteFgslllnrlqeeFek
                    +++++++  +p f ++yA+L+a++nsk+p     +g+l l rl+ +F+k
    KIAA1604   227 SRSVLQAQSASPIFTHVYAALVAIINSKFP----QIGELILKRLILNFRK 272  

                   releaeleeeersdrkrrlglvrFlgELynfqvltekiileilkelledl
                             +r+d++ +l   +F ++L+n+ v +e + le l +lle +
    KIAA1604   273 --------GYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERP 314  

                   teedlqdqvrdeeslecllllLetiGklLdnsekskklmdeilerlqkil
                   t+          +s+e+++ +L+ +G +L+  ++s++ ++ i+erl++il
    KIAA1604   315 TD----------DSVEVAIGFLKECGLKLT--QVSPRGINAIFERLRNIL 352  

                   lkrdkshvrvesepelssrirfmledlielrknk<-*
                   ++            e+++r+++m+e ++++rk+    
    KIAA1604   353 HE-----------SEIDKRVQYMIEVMFAVRKDG    375  

PF02847.7.fs: domain 1 of 1, from 484 to 590: score 93.3, E = 1.5e-27
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      ++++i+l ++++l   D++E+a++ll+++ pe++  e++ +++ ++ 
    KIAA1604   484    FRRTIYLAIQSSL---DFEECAHKLLKMEFPESQTKELCNMILDCCA 527  

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   ++   +ty+++ ++L+ r+c++ + + ++fe  F++ ++++++l+++   
    KIAA1604   528 QQ---RTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETN--- 571  

                   alrnLaeFvarlisdgiLp<-*
                   +lrn+a+ +a+l+ ++ Lp   
    KIAA1604   572 KLRNVAKMFAHLLYTDSLP    590  

PF02847.7.ls: domain 1 of 1, from 484 to 590: score 95.2, E = 1.8e-25
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      ++++i+l ++++l   D++E+a++ll+++ pe++  e++ +++ ++ 
    KIAA1604   484    FRRTIYLAIQSSL---DFEECAHKLLKMEFPESQTKELCNMILDCCA 527  

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   ++   +ty+++ ++L+ r+c++ + + ++fe  F++ ++++++l+++   
    KIAA1604   528 QQ---RTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETN--- 571  

                   alrnLaeFvarlisdgiLp<-*
                   +lrn+a+ +a+l+ ++ Lp   
    KIAA1604   572 KLRNVAKMFAHLLYTDSLP    590  

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