# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj10252.fasta.huge -Q ../query/KIAA1602.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1602, 1003 aa
 vs ./tmplib.25089 library

1986502 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 13.9259+/-0.0111; mu= -24.8226+/- 0.748
 mean_var=642.6348+/-154.284, 0's: 0 Z-trim: 12  B-trim: 0 in 0/40
 Lambda= 0.050593

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1802  ( 821 res)   fj21631                     ( 821)  327 39.3  0.0024


>>KIAA1802  ( 821 res)   fj21631                          (821 aa)
 initn: 146 init1:  71 opt: 327  Z-score: 151.9  bits: 39.3 E(): 0.0024
Smith-Waterman score: 339;  27.879% identity (49.697% similar) in 495 aa overlap (188-643:114-561)

       160       170       180       190       200       210       
KIAA16 AQGPLLPSPARGLKFLKLPPTSEKSPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLAR
                                     :  :: ::....::: ..   . :.  .  
KIAA18 SNVYYHITSKHASPDKWNDKPKNQLNKETDPVKSPPLPEHQKIPCNSAEPKSIPALSMET
            90       100       110       120       130       140   

       220       230            240        250        260          
KIAA16 RGLGGGELSPEGAQGLPTSP----SP-CYTTPD-STQLRPPQ-SALSTTLSPGPVVS-PC
       . ::.  ::::. .  : .:    .:   ..:. .: :  :. :  ... :: :  : : 
KIAA18 QKLGS-VLSPESPKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPASVSSPEPPKSVPV
            150       160       170       180       190       200  

     270       280        290       300             310         320
KIAA16 YENILDLSRSTFRGPSPEPP-PSPLQVPTYPQLTLEVPQA------PEVLRSPGV--PPS
        :     :..    :::::  :.:.. :   . ::  :.       ::.:  :..  : :
KIAA18 CE-----SQKLAPVPSPEPQKPAPVS-PESVKATLSNPKPQKQSHFPETLGPPSASSPES
                 210       220        230       240       250      

               330          340       350         360          370 
KIAA16 PCLPES-YPYG-SP--QEKSLDKAGSESPHPGRRTPGNSSK--KPSQGSG---RRPGDPG
       : :  :  :.: ::  . .:  .: . ::.: . .:..: .  ::  . .   :::. :.
KIAA18 PVLAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPA-PA
        260       270       280       290       300       310      

             380       390       400       410       420       430 
KIAA16 STPLRDRLAALGKLKTGPEGALGSEKNGVPARPGTEKTRGPGKSGESAGDMVPSIHRPLE
        .:        :. : ::    :: .   : . .   . :: : .. : .. :.  .:. 
KIAA18 VSP--------GSWKPGPP---GSPR---PWKSNPSASSGPWKPAKPAPSVSPGPWKPIP
                 320          330          340       350       360 

             440       450       460       470       480        490
KIAA16 QLEAKGGIRGAVALGTNSLKQQEPGLMGDPGARVYSSHSMGARVDLEPVSPRSCLT-KVE
       .. . :  . . .... : :               ::    .     :.::.:  .   :
KIAA18 SV-SPGPWKPTPSVSSASWK---------------SSSVSPSSWKSPPASPESWKSGPPE
              370       380                      390       400     

              500           510       520       530          540   
KIAA16 LAKSRLAGALCPQ----VPRTPAKVPTSAPSLGKPNKSPHSSPT-KLPSKSPT--KVVP-
       : :.  : .: :.    :: .  ..   .: :.   .:: .::  . :: ::   :. : 
KIAA18 LRKT--APTLSPEHWKAVPPVSPELRKPGPPLSPEIRSPAGSPELRKPSGSPDLWKLSPD
           410       420       430       440       450       460   

               550       560        570       580       590        
KIAA16 -RPGAP--LVTKESPKPDKGKGPP-WADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIE
        :  .:  :   :: : ..: .:  : .      :. :. :    :  :: :  :  .  
KIAA18 QRKTSPASLDFPESQKSSRGGSPDLWKSSFFIEPQK-PVFPETRKP--GPSG--PSES--
           470       480       490        500         510          

      600       610       620       630       640       650        
KIAA16 EKVMKGIEENVLRLQGQERAPGAEVKHRNTSSIASWFGLKKSKLPALNRRTEATKNKEGA
        :. . : . :: .. . : :.   .  .:.  ::  . :.. .:               
KIAA18 PKAASDIWKPVLSIDTEPRKPALFPEPAKTAPPASPEARKRALFPEPRKHALFPELPKSA
        520       530       540       550       560       570      

      660       670       680       690       700       710        
KIAA16 GGGSPLRREVKMEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPAPGP
                                                                   
KIAA18 LFSESQKAVELGDELQIDAIDDQKCDILVQEELLASPKKLLEDTLFPSSKKLKKDNQESS
        580       590       600       610       620       630      




1003 residues in 1 query   sequences
1986502 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:47 2008 done: Thu Dec 18 15:09:48 2008
 Total Scan time:  0.680 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]