hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07250144/chunk_1/iprscan-20080502-07250144.nocrc
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Query sequence: KIAA1599
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 100.7    1.7e-25   2
SM00327                                                  59.7    3.7e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2      38   146 ..     1    92 []    47.5  1.8e-09
SM00239    2/2     176   298 ..     1    92 []    53.2  3.4e-11
SM00327    1/1     341   534 ..     1   193 []    59.7  3.7e-13

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 38 to 146: score 47.5, E = 1.8e-09
                   *->tLtvkiisArnLp........DPYVkvs.............kTkvvk
                      t     +s+rnL +++  +++DP +++++++  +++ +  ++T+v+ 
    KIAA1599    38    TKVEITVSCRNLLdkdmfsksDPLCVMYtqgmenkqwrefgRTEVID 84   

                   ktlsgfNPvWnEesetFeFevpp...s.LeieVyDk..........dfiG
                   +tl   NP +     +F ++   +++++L++ +yD ++++++ +++df+G
    KIAA1599    85 NTL---NPDFVR---KFIVDYFFeekQnLRFDLYDVdskspdlskhDFLG 128  

                   rvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ +               l e+ ++++++ +   
    KIAA1599   129 QAFCT--------------LGEIVgSPGSrLE    146  

SM00239: domain 2 of 2, from 176 to 298: score 53.2, E = 3.4e-11
                   *->tLtvkiisArnLp........................DPYVkvs...
                      +    i+sA+ L + ++  +     ++ ++++  +++DP+ ++++++
    KIAA1599   176    KCGTIILSAEELSncrdvatmqfcankldkkdffgksDPFLVFYrsn 222  

                   .........kTkvvkktlsgfNPvWnEesetFeFevpp.......s.Lei
                    +++ +  +kT+v k+tl   NPvW     tF ++v    +++ ++++++
    KIAA1599   223 edgtftichKTEVMKNTL---NPVWQ----TFSIPVRAlcngdydRtIKV 265  

                   eVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   eVyD+++++++dfiG++t +               +el +g+ + +    
    KIAA1599   266 EVYDWdrdgshDFIGEFTTS--------------YRELArGQSQfNI    298  

SM00327: domain 1 of 1, from 341 to 534: score 59.7, E = 3.7e-13
                   *->plDvvfllDgSgSmg...............gnrfekvkefv.klveq
                      + ++++ +D ++S g+++++++ +  ++ + n + +++++v+++++ 
    KIAA1599   341    QINFTVAIDFTASNGnpsqstslhymspyqLNAYALALTAVgEIIQH 387  

                   ld.gdrvglvqFss......dvrvefpln.......sqskdallealasl
                    d++  + +++F+ + +++++v +efpln++++++++   d +lea ++ 
    KIAA1599   388 YDsDKMFPALGFGAklppdgRVSHEFPLNgnqenpsCCGIDGILEAYHRS 437  

                   sykglkdyslgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkv
                    +    + +l+g+Tn+++ + ++++n+ + + g+++             v
    KIAA1599   438 LR----TVQLYGPTNFApVVTHVARNAAAVQDGsQY------------SV 471  

                   liliTDGesndggddpedileaakelkrsgvkvfvigvgnade.elkeia
                   l++iTDG  +    d  +++ea+ ++ +   +++++gvg+a ++ + e++
    KIAA1599   472 LLIITDGVIS----DMAQTKEAIVNAAKLPMSIIIVGVGQAEFdAMVELD 517  

                   sep.gehvffdvsdvedlpslldllidlll<-*
                   +++ +              s + +l ++ +   
    KIAA1599   518 GDDvRI-------------SSRGKLAERDI    534  

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