hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07214985/chunk_1/iprscan-20080502-07214985.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1597 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 109.2 4.9e-28 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/2 623 728 .. 1 92 [] 63.9 2.1e-14 SM00239 2/2 772 875 .. 1 92 [] 45.3 8.2e-09 Alignments of top-scoring domains: SM00239: domain 1 of 2, from 623 to 728: score 63.9, E = 2.1e-14 *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk L+v + ++++L + ++ ++DPYVk + +++++ +++kT vvkk KIAA1597 623 ELHVFVAQCKDLAaadvkkqrsDPYVKAYllpdkgkmgkkKTLVVKK 669 tlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvt tl NPv+nE + +++ + ++++L ++++++++ +++ f+G+v+ KIAA1597 670 TL---NPVYNE---ILRYKIEKqilktQkLNLSIWHRdtfkrnSFLGEVE 713 ippnnahqhsadglihlsell.ggrh.kl<-* ++ l++ + ++++k KIAA1597 714 LD--------------LETWDwDNKQnKQ 728 SM00239: domain 2 of 2, from 772 to 875: score 45.3, E = 8.2e-09 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl ++++++++ +Lp ++++ + +Vk + +++++++++kT+ v kt KIAA1597 772 EVHIWVKECLDLPllrgshlNSFVKCTilpdtsrksrqKTRAVGKTT 818 sgfNPvWnEesetFeFevpp......s.LeieVyDk.....dfiGrvtip NP++n+ t++++ ++++ + +e++V+D+ + +++f+G ++i+ KIAA1597 819 ---NPIFNH---TMVYDGFRpedlmeVcVELTVWDHykltnQFLGGLRIG 862 pnnahqhsadglihlsell.ggrh.kl<-* + + ++ g + KIAA1597 863 --------------FGTGKsYGTEvDW 875 //