# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj09819.fasta.huge -Q ../query/KIAA1597.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1597, 913 aa vs ./tmplib.25089 library 1986592 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.3682+/-0.00803; mu= -5.6601+/- 0.541 mean_var=280.5493+/-66.777, 0's: 0 Z-trim: 11 B-trim: 0 in 0/40 Lambda= 0.076572 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0985 ( 697 res) hj08038 ( 697) 282 45.1 3.4e-05 KIAA1228 ( 843 res) fh05620s1 ( 843) 229 39.3 0.0023 >>KIAA0985 ( 697 res) hj08038 (697 aa) initn: 321 init1: 209 opt: 282 Z-score: 185.1 bits: 45.1 E(): 3.4e-05 Smith-Waterman score: 385; 22.302% identity (52.158% similar) in 556 aa overlap (375-891:163-690) 350 360 370 380 390 400 KIAA15 PQSPGLIHGREVGEFSVLESDRLKNGMEDAGDTEEFQSDPKPSQYRKPSLFHQSTSSPYV : .. .: : . :: .: .: : . KIAA09 TNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPKQVLPQPMPIKKTKP---QQPVSEPAA 140 150 160 170 180 410 420 430 440 450 460 KIAA15 SKSETHQPMTSGSFPING----LHSHSEVLTARPQSMENSPTINEPKDKSSELTRLESVL .. . .: . : : .. .. : : . . . : ..:: .:. : KIAA09 PEQPAPEPKHPARAPARGDSEDRRGPGQKTGPDPASAPGRGNYGPPVRRASE-ARMSSSS 190 200 210 220 230 240 470 480 490 500 510 KIAA15 PRSPADELSHCVEPEPSQVPGGSSR-DRQQGSEEEPSPVLKTLERSAARKMPSKSLEDIS : . . : . . :. :.: : . :.:. :. : .: : .:.. . KIAA09 RDSESWDHSGGA-GDSSRSPAGLRRANSVQASRPAPGSV-----QSPAPPQPGQPGTPGG 250 260 270 280 290 300 520 530 540 550 560 570 KIAA15 S--DSSNQAKVDNQPEELVRSAEDDEKPDQKPVTNEC--VPRISTVP---TQPDNPFSH- : . .. .: :.. : : .. :. : ... ..:..:.:. KIAA09 SRPGPGPAGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQA 310 320 330 340 350 360 580 590 600 610 620 KIAA15 ----PDKLKRMSKSVPAFLQDEVSGSVMSVYSGDFGNLEVKGNIQFAIEYVESLKELHVF :. . : ..:.. : : . . : ..:.. : .. . :. KIAA09 SAAAPQPAAARQPPPPEEEEEEAN-------SYDSDEATTLGALEFSLLYDQDNSSLQCT 370 380 390 400 410 630 640 650 660 670 680 KIAA15 VAQCKDLAAADVKKQRSDPYVKAYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYK-IEKQ . . : : : .. .::::: .::: .: .: .: ....: ::..:: : :. : . KIAA09 IIKAKGLKPMD-SNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNETLVYHGITDE 420 430 440 450 460 470 690 700 710 720 730 740 KIAA15 ILKTQKLNLSIWHRDTFKRNSFLGEVELDLETWDWDNKQNKQL---RWYPLKRKTAP--- .. . : .:. .: : .: :.::....:. ....: .. : :.:: . KIAA09 DMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPMKRAGTTGSA 480 490 500 510 520 530 750 760 770 780 KIAA15 --VAL----------EAENRGEMKLALQYVPEPVPGKKLPTTGEVHIWVKECLDLPLLRG .:: . :.::.. ..:.: . : . . . .:. : . . KIAA09 RGMALYEEEQVERVGDIEERGKILVSLMYSTQQ---------GGLIVGIIRCVHLAAMDA 540 550 560 570 580 790 800 810 820 830 840 KIAA15 S-HLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRPEDLMEVCVELTVWD . . . ::: . :: ..:...::. :: :: ::. . :: .. :: . ....::: KIAA09 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWD 590 600 610 620 630 640 850 860 870 880 890 900 KIAA15 H-YKLTNQFLGGLRIGFGT-GKSYGTEVDWMDSTSEEVALWEKMVNSPNTWIEATLPLRM . .:...:: ..:... :. . . . .... :... : KIAA09 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD 650 660 670 680 690 910 KIAA15 LLIAKISK >>KIAA1228 ( 843 res) fh05620s1 (843 aa) initn: 192 init1: 159 opt: 229 Z-score: 152.4 bits: 39.3 E(): 0.0023 Smith-Waterman score: 229; 32.609% identity (64.493% similar) in 138 aa overlap (609-743:710-842) 580 590 600 610 620 630 KIAA15 SKSVPAFLQDEVSGSVMSVYSGDFGNLEVKGNIQFAIEYVESLKELHVFVAQCKDLAAAD :.::..:.. . ..: : : :..: : KIAA12 SDISLPIATQELRQRLRQLENGTTLGQSPLGQIQLTIRHSSQRNKLIVVVHACRNLIA-- 680 690 700 710 720 730 640 650 660 670 680 690 KIAA15 VKKQRSDPYVKAYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIW ... :::::. :::::: . :..:: : :::::::... . ... .. . :.... KIAA12 FSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK 740 750 760 770 780 790 700 710 720 730 740 750 KIAA15 HRDTF--KRNSFLGEVELDLETWDWDNKQNKQLRWYPLKRK-TAPVALEAENRGEMKLAL . : : ...::.: . : . .. . .:: : . : : :. KIAA12 NSGGFLSKDKGLLGKVLVALAS---EELAKGWTQWYDLTEDGTRPQAMT 800 810 820 830 840 760 770 780 790 800 810 KIAA15 QYVPEPVPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVG 913 residues in 1 query sequences 1986592 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:36 2008 done: Thu Dec 18 15:09:37 2008 Total Scan time: 0.640 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]