hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07082393/chunk_1/iprscan-20080502-07082393.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1589 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01363.12.ls FYVE zinc finger 115.8 1.2e-31 2 PF01363.12.fs FYVE zinc finger 112.1 1.5e-30 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01363.12.fs 1/2 632 699 .. 1 77 [] 56.1 8.2e-15 PF01363.12.ls 1/2 632 699 .. 1 77 [] 58.0 2.9e-14 PF01363.12.fs 2/2 749 810 .. 1 72 [. 55.9 9.3e-15 PF01363.12.ls 2/2 749 815 .. 1 77 [] 57.8 3.3e-14 Alignments of top-scoring domains: PF01363.12.fs: domain 1 of 2, from 632 to 699: score 56.1, E = 8.2e-15 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++W p + +C+ C ++F + +HHCRaCG fC+sCsskt ++ KIAA1589 632 AYWRPNSQILSCNKCATSFK-DNDTKHHCRACGEGFCDSCSSKTRPV 677 pylgiaallkndviekpvRVCdsCydrlnk<-* p+ g pvRVCd+Cy+ n KIAA1589 678 PERGW--------GPAPVRVCDNCYEARNV 699 PF01363.12.ls: domain 1 of 2, from 632 to 699: score 58.0, E = 2.9e-14 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++W p + +C+ C ++F + +HHCRaCG fC+sCsskt ++ KIAA1589 632 AYWRPNSQILSCNKCATSFK-DNDTKHHCRACGEGFCDSCSSKTRPV 677 pylgiaallkndviekpvRVCdsCydrlnk<-* p+ g pvRVCd+Cy+ n KIAA1589 678 PERGW--------GPAPVRVCDNCYEARNV 699 PF01363.12.fs: domain 2 of 2, from 749 to 810: score 55.9, E = 9.3e-15 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++WvpD e +C++C+k+F+ + +HHCRaCG+ fC++Cs + ++ KIAA1589 749 AYWVPDHEILHCHNCRKEFS-IKLSKHHCRACGQGFCDECSHDRRAV 794 pylgiaallkndviekpvRVCdsCy<-* p+ g pvRVC +C+ KIAA1589 795 PSRGW---------DHPVRVCFNCN 810 PF01363.12.ls: domain 2 of 2, from 749 to 815: score 57.8, E = 3.3e-14 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll ++WvpD e +C++C+k+F+ + +HHCRaCG+ fC++Cs + ++ KIAA1589 749 AYWVPDHEILHCHNCRKEFS-IKLSKHHCRACGQGFCDECSHDRRAV 794 pylgiaallkndviekpvRVCdsCydrlnk<-* p+ g pvRVC +C+ + KIAA1589 795 PSRGW---------DHPVRVCFNCNKKPGD 815 //