# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj08951.fasta.huge -Q ../query/KIAA1589.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1589, 816 aa vs ./tmplib.25089 library 1986689 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.5284+/-0.00583; mu= 26.5802+/- 0.399 mean_var=130.6740+/-30.831, 0's: 0 Z-trim: 11 B-trim: 0 in 0/40 Lambda= 0.112197 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1537 ( 619 res) fj02581s1 ( 619) 239 50.5 6.5e-07 KIAA1643 ( 993 res) hh10131(revised) ( 993) 234 50.1 1.4e-06 KIAA0647 ( 1195 res) hj03819s1 (1195) 228 49.3 2.9e-06 KIAA0371 ( 1203 res) hh00252 (1203) 222 48.3 5.7e-06 KIAA1362 ( 699 res) fj02381 ( 699) 201 44.4 4.8e-05 KIAA0305 ( 1547 res) hg00042 (1547) 201 45.1 6.6e-05 KIAA0993 ( 1556 res) bf03014 (1556) 197 44.5 0.0001 KIAA0321 ( 1542 res) hg00426 (1542) 172 40.4 0.0017 KIAA1435 ( 415 res) hh13841 ( 415) 163 37.8 0.0028 KIAA1255 ( 1232 res) hh14633s1 (1232) 166 39.3 0.0031 >>KIAA1537 ( 619 res) fj02581s1 (619 aa) initn: 199 init1: 199 opt: 239 Z-score: 216.0 bits: 50.5 E(): 6.5e-07 Smith-Waterman score: 239; 36.111% identity (62.963% similar) in 108 aa overlap (708-810:503-607) 680 690 700 710 720 730 KIAA15 PERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTL--IARKVGEAVQNTLGAVVTAI ..::. : : .. .:.:. :: .. KIAA15 QEDLQKEKDALSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQE-LGNKLSES 480 490 500 510 520 530 740 750 760 770 780 790 KIAA15 DIPLGLVKDAARPAY---WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRR . . .:.: . :. :.: ::. :.::::.. ::::: ::. ::. :: .. KIAA15 KLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNEL 540 550 560 570 580 590 800 810 KIAA15 AVPSRGWDHPVRVCFNCNKKPGDL .:: .::::: .:. KIAA15 PLPSS--PKPVRVCDSCHALLIQRCSSNLP 600 610 >>KIAA1643 ( 993 res) hh10131(revised) (993 aa) initn: 375 init1: 224 opt: 234 Z-score: 210.1 bits: 50.1 E(): 1.4e-06 Smith-Waterman score: 234; 38.824% identity (56.471% similar) in 85 aa overlap (725-809:897-978) 700 710 720 730 740 750 KIAA15 EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD :.::.. : : .: : :::: KIAA16 ATKPETDDKEKLRKVTQTLRSAALEDCALCQETLSSSELAAKTRDGDFED---PPEWVPD 870 880 890 900 910 920 760 770 780 790 800 810 KIAA15 HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG . : :. :.. :::::.::. ::..:: .: : .::::: .: KIAA16 EACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHV 930 940 950 960 970 980 KIAA15 DL KIAA16 TPFYSDKAGL 990 >>KIAA0647 ( 1195 res) hj03819s1 (1195 aa) initn: 355 init1: 228 opt: 228 Z-score: 204.3 bits: 49.3 E(): 2.9e-06 Smith-Waterman score: 228; 45.763% identity (61.017% similar) in 59 aa overlap (751-809:1111-1169) 730 740 750 760 770 780 KIAA15 GEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACG ::::: ::.:: :: . .:::: :: KIAA06 TEDFGSDHSEDCLSEASWEPVDKKETEVTRWVPDHMASHCYNCDCEFWLAKRRHHCRNCG 1090 1100 1110 1120 1130 1140 790 800 810 KIAA15 QGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL . :: : : . .:.. :: :: .: KIAA06 NVFCAGCCHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELMSQQLKKPIATASS 1150 1160 1170 1180 1190 >>KIAA0371 ( 1203 res) hh00252 (1203 aa) initn: 345 init1: 206 opt: 222 Z-score: 199.1 bits: 48.3 E(): 5.7e-06 Smith-Waterman score: 222; 44.068% identity (64.407% similar) in 59 aa overlap (751-809:1121-1179) 730 740 750 760 770 780 KIAA15 GEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACG :.::: ::. : . : . ::::: :: KIAA03 DQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCG 1100 1110 1120 1130 1140 1150 790 800 810 KIAA15 QGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL . ::. : ... :::. .: ::: .: KIAA03 NVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKPIAATSN 1160 1170 1180 1190 1200 >>KIAA1362 ( 699 res) fj02381 (699 aa) initn: 260 init1: 148 opt: 201 Z-score: 182.4 bits: 44.4 E(): 4.8e-05 Smith-Waterman score: 201; 27.731% identity (55.462% similar) in 119 aa overlap (697-809:491-608) 670 680 690 700 710 720 KIAA15 CDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAVQN :. :... : :: :.: . : ... KIAA13 LNNMLSLAGMKVRKPTQEAYQNELKIESVERSFILSASSATERDEWLEAISRAIEEYAKK 470 480 490 500 510 520 730 740 750 760 770 780 KIAA15 TLGAVVT-AIDIPLGLVKDAARP-----AYWVPDHEILHCHNCRKEFSIKLSKHHCRACG . . ..: . :. . : :.:: . : : .::.. .::::::: KIAA13 RITFCPSRSLDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACG 530 540 550 560 570 580 790 800 810 KIAA15 QGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL . :. :: .. .. . ..:.::: .: KIAA13 KIVCQACSSNKYGL-DYLKNQPARVCEHCFQELQKLDHQHSPRIGSPGNHKSPSSALSSV 590 600 610 620 630 >>KIAA0305 ( 1547 res) hg00042 (1547 aa) initn: 259 init1: 173 opt: 201 Z-score: 179.9 bits: 45.1 E(): 6.6e-05 Smith-Waterman score: 201; 40.000% identity (60.000% similar) in 70 aa overlap (740-809:742-808) 710 720 730 740 750 760 KIAA15 DEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSI ::: .:. :::: : .: ::. .:.. KIAA03 NYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPT-WVPDSEAPNCMNCQVKFTF 720 730 740 750 760 770 770 780 790 800 810 KIAA15 KLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL .:::::::. :: : . : . .. .::: : KIAA03 TKRRHHCRACGKVFCGVCCN--RKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSN 780 790 800 810 820 KIAA03 LKSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNG 830 840 850 860 870 880 >>KIAA0993 ( 1556 res) bf03014 (1556 aa) initn: 221 init1: 197 opt: 197 Z-score: 176.4 bits: 44.5 E(): 0.0001 Smith-Waterman score: 215; 33.636% identity (60.909% similar) in 110 aa overlap (590-694:1435-1540) 560 570 580 590 600 610 KIAA15 RQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTK ::: . :. : .... :.. .: .. KIAA09 RNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEVTALG---ISKDHSRILVGDSR 1410 1420 1430 1440 1450 1460 620 630 640 650 660 670 KIAA15 A-VTSW-LTDQI---APAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKT . : :: ..:: : .: . ::. :.. :. .. .:::: ::. ::..:: KIAA09 GRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQ 1470 1480 1490 1500 1510 1520 680 690 700 710 720 730 KIAA15 RPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTA . .: .:::::.::: KIAA09 SEI-KRLKISSPVRVCQNCYYNLQHERGSEDGPRNC 1530 1540 1550 >>KIAA0321 ( 1542 res) hg00426 (1542 aa) initn: 203 init1: 115 opt: 172 Z-score: 154.6 bits: 40.4 E(): 0.0017 Smith-Waterman score: 187; 35.955% identity (51.685% similar) in 89 aa overlap (609-694:785-871) 580 590 600 610 620 630 KIAA15 VHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAY--WRP :. : :. ::. .. :: : : KIAA03 QAADPETLPRSPSAEFSPAAPPGISSIHSPSLRERSFPPTQPSQEFVPPATPPARHQWVP 760 770 780 790 800 810 640 650 660 670 680 690 KIAA15 NSQILSCNKCATS-FKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYE . : : : . .:::: ::. :.:::.: : .: :.::::.:: KIAA03 DETESICMVCCREHFTMFNRRHHCRRCGRLVCSSCSTKKMVV--EGCRENPARVCDQCYS 820 830 840 850 860 870 700 710 720 730 740 750 KIAA15 ARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDH KIAA03 YCNKDVPEEPSEKPEALDSSKSESPPYSFVVRVPKADEVEWILDLKEEENELVRSEFYYE 880 890 900 910 920 930 >>KIAA1435 ( 415 res) hh13841 (415 aa) initn: 211 init1: 154 opt: 163 Z-score: 150.7 bits: 37.8 E(): 0.0028 Smith-Waterman score: 183; 33.858% identity (51.969% similar) in 127 aa overlap (584-696:238-355) 560 570 580 590 600 610 KIAA15 GVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSEL : .:. ... .: : ... : :: KIAA14 ACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCY-LQLTRQLVSCS 210 220 230 240 250 260 620 630 640 650 KIAA15 SLGPTKAVTSWLTD---QIAPAYWRPNSQILSCNKCATSFKDN-----DTK------HHC : : ... : : . :: : .. ::.:: : : ::: ::: KIAA14 SDG---GIAVWNMDVSREEAPQ-WLESD---SCQKCEQPFFWNIKQMWDTKTLGLRQHHC 270 280 290 300 310 660 670 680 690 700 710 KIAA15 RACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARK : ::.. : .:::: : :. :::::.::.. KIAA14 RKCGQAVCGKCSSKRSSYPVMGF-EFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMS 320 330 340 350 360 370 720 730 740 750 760 770 KIAA15 VGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRAC KIAA14 MDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH 380 390 400 410 >>KIAA1255 ( 1232 res) hh14633s1 (1232 aa) initn: 218 init1: 160 opt: 166 Z-score: 150.0 bits: 39.3 E(): 0.0031 Smith-Waterman score: 172; 28.758% identity (50.980% similar) in 153 aa overlap (545-695:1097-1224) 520 530 540 550 560 570 KIAA15 YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNC-GVVYRSRQYWFGNQDPVDTV :: .. :. : . : :: . .. KIAA12 LRGQSPLHILGQYGKENAAAIFDLFLECMPGYPLDKPDADGSTVLLLAYMKGNANLCRAI 1070 1080 1090 1100 1110 1120 580 590 600 610 620 630 KIAA15 VRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAY ::. :. : ::: .:.:.. .:. :: . : :... KIAA12 VRS-------GAR--LGVNNN------QGVNIFNYQVA------TKQLLFRLLDMLSKEP 1130 1140 1150 1160 640 650 660 670 680 690 KIAA15 -WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDN : .: : .:.. : . ::::: ::. .: .::.: :. . . :::::. KIAA12 PWCDGSY---CYECTARFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNK-PVRVCNI 1170 1180 1190 1200 1210 1220 700 710 720 730 740 750 KIAA15 CYEARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWV :.. KIAA12 CFDVLTLGGVS 1230 816 residues in 1 query sequences 1986689 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:17 2008 done: Thu Dec 18 15:09:17 2008 Total Scan time: 0.590 Total Display time: 0.180 Function used was FASTA [version 34.26.5 April 26, 2007]