# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj06651.fasta.huge -Q ../query/KIAA1583.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1583, 435 aa
 vs ./tmplib.25089 library

1987070 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.8007+/-0.00661; mu= 12.8984+/- 0.448
 mean_var=176.3250+/-42.554, 0's: 0 Z-trim: 4  B-trim: 16 in 1/39
 Lambda= 0.096587

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1786  ( 400 res)   fh19009                     ( 400)  268 48.9 6.5e-07


>>KIAA1786  ( 400 res)   fh19009                          (400 aa)
 initn: 365 init1: 154 opt: 268  Z-score: 215.9  bits: 48.9 E(): 6.5e-07
Smith-Waterman score: 423;  29.907% identity (59.190% similar) in 321 aa overlap (130-415:13-323)

     100       110       120       130       140       150         
KIAA15 PRAQPLLRASYPPFATQQVVPPRVTEPHQRPVPWDVRAVSVEAAVTPAEPYARVLFHLKG
                                     :  : ...  .....   .: ...::.. :
KIAA17                   LTSTAFGNMDKFPFNWKLKSHILDSSIYSNRPKVQTLFYVTG
                                 10        20        30        40  

     160         170       180       190       200       210       
KIAA15 QDWPPG--SGSLPCARLHATHPAGTAHQACRFQPSLGACVVELELPSHWFSQA-------
       . :  .  . .:::... :   :  .  .::.: . : ::.::::  .:::..       
KIAA17 MGWDDSDLTEDLPCVKMFAFPEAREVAASCRLQGAPGLCVAELELLPEWFSSGLDLEPEE
             50        60        70        80        90       100  

                    220       230                 240           250
KIAA15 ------STTRAELAYTLEPAAEGPGGC-----GSGEEN-----DPGEQALP----VGGVE
             . :  :: .:: :: .. : :     :. :.:     .  .::.:    .:.: 
KIAA17 EIPALLGGTTMELFFTLYPADKA-GQCPLEEEGKWENNIHSGLESPQQAFPARERIGSVV
            110       120        130       140       150       160 

               260       270       280       290       300         
KIAA15 LRPA-DPPQYQEVPLDEAVTLRVPDMPVRPGQLFSATLLLRHNFTASLLTLRIKVKKGLH
       . :. :  ... : ::: :.. ::   :: :.  .  . :  . .:. .:::::.  :..
KIAA17 VYPTQDDLKWSLVSLDENVVISVPLNLVREGDTATFLVSLTSSSVADQFTLRIKAAAGVK
             170       180       190       200       210       220 

     310       320       330       340         350          360    
KIAA15 VTAARPAQPTLWTAKLDRFKGSRHHTTLITC--HRAGLTEPDSSPL---ELSEFLWVDFV
       .::.: ..   :... .  .:: . .. .::  ::     ::..      . :.: ::: 
KIAA17 ITAVRVSSEDQWAVQEEIDNGSTQTSATLTCMGHR-----PDTQSRVNGSFYEILQVDFG
             230       240       250            260       270      

          370       380       390       400       410       420    
KIAA15 VENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSERDIRALIPLAKVRRPPSLP
       ..::.   .: .. .:::.::: .  .. .. .: ::.::.  . ...:::         
KIAA17 IDNSSD--LAGAQQITWQVEYPIE--DSMSELVVSEIFVSQTTFVGIVPLAMDTEVLNTA
        280         290         300       310       320       330  

          430                                                      
KIAA15 GKAGGQVPGAP                                                 
                                                                   
KIAA17 ILTGKPVSVPVKVVGVQEDGSVVDVSESVECKSADEDVIKVRGDLSTAVLSAQSFLSFLL
            340       350       360       370       380       390  




435 residues in 1 query   sequences
1987070 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:03 2008 done: Thu Dec 18 15:09:04 2008
 Total Scan time:  0.410 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]