hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06513922/chunk_1/iprscan-20080502-06513922.nocrc
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Query sequence: KIAA1579
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 138.2      9e-37   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/3      96   162 ..     1   121 []    48.6  8.3e-10
SM00360    2/3     169   242 ..     1   121 []    55.2  8.4e-12
SM00360    3/3     258   331 ..     1   121 []    34.4  1.6e-05

Alignments of top-scoring domains:
SM00360: domain 1 of 3, from 96 to 162: score 48.6, E = 8.3e-10
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++ V+NL  p d + +++++l               + + +++++ +
    KIAA1579    96    KILVKNL--PQDSNCQEVHDLL--------------KDY-DLKYCYV 125  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    r+k                             aFV+  + e+A++A  i
    KIAA1579   126 DRNKR---------------------------TAFVTLLNGEQAQNA--I 146  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++++    + +   G+    l V+   
    KIAA1579   147 QMFH---QYSF--RGKD---LIVQ    162  

SM00360: domain 2 of 3, from 169 to 242: score 55.2, E = 8.4e-12
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       l + N+  p + t e+ +el               + +G+++++ +
    KIAA1579   169    LLCITNV--PISFTSEEFEELV--------------RAYGNIERCFL 199  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+ ++                     TG skG++FVe+  ++ A+kA+ +
    KIAA1579   200 VYSEV---------------------TGHSKGYGFVEYMKKDFAAKAR-L 227  

                   ealnaskGkeledgGrptlglrVe<-*
                   e+l+    ++l  g      l  +   
    KIAA1579   228 ELLG----RQL--GASA---LFAQ    242  

SM00360: domain 3 of 3, from 258 to 331: score 34.4, E = 1.6e-05
                   *->tlfVgNLndppdvte.edLrelFkevksvevfraeteskfGkvvsvr
                      +l +  L  p+d  ++e+L ++F              s   k v ++
    KIAA1579   258    CLCIDKL--PSDYRDsEELLQIF--------------SSVHKPVFCQ 288  

                   ivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAll
                   +  d+                           Gfa Ve++++e+Ae +  
    KIAA1579   289 LAQDEG----------------------SYVGGFAVVEYSTAEQAEEV-- 314  

                   iealnaskGkeledgGrptlglrVe<-*
                   ++a +   G+++  +G +   ++V+   
    KIAA1579   315 QQAAD---GMTI--KGSK---VQVS    331  

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