hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06513922/chunk_1/iprscan-20080502-06513922.nocrc
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Query sequence: KIAA1579
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     89.4    9.9e-24   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     84.9    4.8e-23   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3      97   161 ..     1    74 []    21.5  2.9e-05
PF00076.12.ls   1/3      97   161 ..     1    74 []    23.3  0.00078
PF00076.12.fs   2/3     170   241 ..     1    74 []    39.4  2.7e-10
PF00076.12.ls   2/3     170   241 ..     1    74 []    41.4    3e-09
PF00076.12.ls   3/3     259   330 ..     1    74 []    24.7   0.0003
PF00076.12.fs   3/3     299   330 ..    43    74 .]    24.0  5.6e-06

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 97 to 161: score 21.5, E = 2.9e-05
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V+NLp+d + +++ dl +++ + + + + r+        k+ aFV
    KIAA1579    97    ILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRN--------KRTAFV 134  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +  + e+A+ A++  + + ++g+ l v   
    KIAA1579   135 TLLNGEQAQNAIQMFHQYSFRGKDLIV    161  

PF00076.12.ls: domain 1 of 3, from 97 to 161: score 23.3, E = 0.00078
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + V+NLp+d + +++ dl +++ + + + + r+        k+ aFV
    KIAA1579    97    ILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRN--------KRTAFV 134  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +  + e+A+ A++  + + ++g+ l v   
    KIAA1579   135 TLLNGEQAQNAIQMFHQYSFRGKDLIV    161  

PF00076.12.fs: domain 2 of 3, from 170 to 241: score 39.4, E = 2.7e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l ++N p + t e+ ++l + +G ie++ +v+     tg skG++FV
    KIAA1579   170    LCITNVPISFTSEEFEELVRAYGNIERCFLVYS--EVTGHSKGYGFV 214  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+ +++ A+kA  +l G++lg   l     
    KIAA1579   215 EYMKKDFAAKARLELLGRQLGASALFA    241  

PF00076.12.ls: domain 2 of 3, from 170 to 241: score 41.4, E = 3e-09
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l ++N p + t e+ ++l + +G ie++ +v+     tg skG++FV
    KIAA1579   170    LCITNVPISFTSEEFEELVRAYGNIERCFLVYS--EVTGHSKGYGFV 214  

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+ +++ A+kA  +l G++lg   l     
    KIAA1579   215 EYMKKDFAAKARLELLGRQLGASALFA    241  

PF00076.12.ls: domain 3 of 3, from 259 to 330: score 24.7, E = 0.0003
                   *->lfVgNLppdtte.edLkdlFskfGpiesikivrDttretgrskGfaF
                      l +  Lp d+ ++e+L ++Fs + + + +++  D   e     Gfa 
    KIAA1579   259    LCIDKLPSDYRDsEELLQIFSSVHKPVFCQLAQD---EGSYVGGFAV 302  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   Ve+ + e+Ae++ +a +G++++g ++ v   
    KIAA1579   303 VEYSTAEQAEEVQQAADGMTIKGSKVQV    330  

PF00076.12.fs: domain 3 of 3, from 299 to 330: score 24.0, E = 5.6e-06
                   *->GfaFVeFedeedAekAldalnGkelggrelrv<-*
                      Gfa Ve+ + e+Ae++ +a +G++++g ++ v   
    KIAA1579   299    GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV    330  

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