# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj04678.fasta.huge -Q ../query/KIAA1579.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1579, 704 aa
 vs ./tmplib.25089 library

1986801 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.6566+/-0.00715; mu= 16.0424+/- 0.486
 mean_var=198.0870+/-47.461, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.091127

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1978  ( 384 res)   fj03313                     ( 384) 1117 159.2 6.6e-40


>>KIAA1978  ( 384 res)   fj03313                          (384 aa)
 initn: 1100 init1: 1032 opt: 1117  Z-score: 808.3  bits: 159.2 E(): 6.6e-40
Smith-Waterman score: 1117;  49.864% identity (72.900% similar) in 369 aa overlap (132-489:17-382)

             110       120       130       140       150       160 
KIAA15 LPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV
                                     :::::::::::. ::. :::  .: ..: :
KIAA19               PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV
                             10        20        30        40      

             170       180       190       200       210       220 
KIAA15 QLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDF
       ::::::::::..:.: :.:...:::::: .:..::::::::: ::.::::::.:::::: 
KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS
         50        60        70        80        90       100      

             230       240       250       260       270       280 
KIAA15 AAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSV
       ::.:. .:::. ::  .:...: :.. :.  :.::.:::.:.::  . : . : . .:.:
KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV
        110       120       130       140       150       160      

             290       300       310       320       330       340 
KIAA15 HKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRS
       :.:.:::::  . . . ::::.:: :::.:::.:: :::... ::...::::::: ::::
KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS
        170       180       190       200       210       220      

             350       360       370       380       390        400
KIAA15 TLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRAV-KPAVLGTP
        :::::::: .  .  :::::::: .:....:.  : ::.::.: : : :  : ..::.:
KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP
        230       240       250       260       270       280      

              410         420          430       440       450     
KIAA15 HSLPHLMNPSISPAFLHL--NKAHQNLSHI---PLAQQQLMKFENIHTNNKPGLLGEPPA
        ..: : .:..: :.:.:  .   :...:    : : : :. . :  : .  : .: : :
KIAA19 PAMPLLNGPALSTALLQLALQTQGQKVTHASPSPTALQPLQALFN--TAGAIGGVGGPLA
        290       300       310       320       330         340    

         460       470       480            490       500       510
KIAA15 VVLQTALGIGSVLPLKKELGHHHGE-----AHKTSSLIPTQTTITAGMGMLPFFPNQHIA
       :       .  . : .  :.: : .     ::  :  .:                     
KIAA19 VPWGRRTRV-RATPPNPCLSHPHPHPPLAIAHDGSPSFPPF                   
          350        360       370       380                       

              520       530       540       550       560       570
KIAA15 GQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPKGTEI




704 residues in 1 query   sequences
1986801 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:08:54 2008 done: Thu Dec 18 15:08:55 2008
 Total Scan time:  0.550 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]