hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06261645/chunk_1/iprscan-20080502-06261645.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1564 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 352.3 7.4e-103 1 PF00176.13.fs SNF2 family N-terminal domain 350.5 2.6e-102 1 PF07533.6.ls Associated with TFs and helicases 119.1 1.1e-32 2 PF07533.6.fs Associated with TFs and helicases 115.5 1.4e-32 2 PF00385.14.ls 'chromo' (CHRromatin Organisation MOdifier 103.1 7.4e-28 2 PF00385.14.fs 'chromo' (CHRromatin Organisation MOdifier 99.5 9.6e-27 2 PF00271.21.fs Helicase conserved C-terminal domain 87.0 8.6e-25 1 PF00271.21.ls Helicase conserved C-terminal domain 89.0 1.3e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00385.14.fs 1/2 493 555 .. 1 68 [] 46.9 5.3e-12 PF00385.14.ls 1/2 493 555 .. 1 68 [] 48.8 1.7e-11 PF00385.14.ls 2/2 575 629 .. 1 68 [] 54.4 3.6e-13 PF00385.14.fs 2/2 575 629 .. 1 68 [] 52.6 1.4e-13 PF00176.13.fs 1/1 665 952 .. 1 355 [] 350.5 2.6e-102 PF00176.13.ls 1/1 665 952 .. 1 355 [] 352.3 7.4e-103 PF00271.21.ls 1/1 1019 1098 .. 1 76 [] 89.0 1.3e-23 PF00271.21.fs 1/1 1019 1098 .. 1 76 [] 87.0 8.6e-25 PF07533.6.ls 1/2 2161 2205 .. 1 49 [] 80.9 3.7e-21 PF07533.6.fs 1/2 2161 2205 .. 1 49 [] 79.0 5.4e-22 PF07533.6.ls 2/2 2230 2266 .. 1 49 [] 38.2 2.5e-08 PF07533.6.fs 2/2 2230 2266 .. 1 49 [] 36.5 1.1e-09 Alignments of top-scoring domains: PF00385.14.fs: domain 1 of 2, from 493 to 555: score 46.9, E = 5.3e-12 *->yeVErILdhrlrkggkksvplpe.kpitgleYLVKWkGypyeenTWE +V+++L +r++k+ p++++++ +e++VK+k+y+y ++ W KIAA1564 493 AIVDKVLSMRIVKKEL-----PSgQYTEAEEFFVKYKNYSYLHCEWA 534 peenLkack.gfpelkieefeqr<-* +++ L+++k+++++ +++f+ + KIAA1564 535 TISQLEKDKrIHQK--LKRFKTK 555 PF00385.14.ls: domain 1 of 2, from 493 to 555: score 48.8, E = 1.7e-11 *->yeVErILdhrlrkggkksvplpe.kpitgleYLVKWkGypyeenTWE +V+++L +r++k+ p++++++ +e++VK+k+y+y ++ W KIAA1564 493 AIVDKVLSMRIVKKEL-----PSgQYTEAEEFFVKYKNYSYLHCEWA 534 peenLkack.gfpelkieefeqr<-* +++ L+++k+++++ +++f+ + KIAA1564 535 TISQLEKDKrIHQK--LKRFKTK 555 PF00385.14.ls: domain 2 of 2, from 575 to 629: score 54.4, E = 3.6e-13 *->yeVErILdhr..lrkggkksvplpekpitgleYLVKWkGypyeenTW eV+rILd +++++k+ ++ v +YLVKW+ +pye++TW KIAA1564 575 VEVDRILDEShsIDKDNGEPVI---------YYLVKWCSLPYEDSTW 612 EpeenLkackgfpelkieefeqr<-* E e++++ ki ef++ KIAA1564 613 ELKEDVDEG------KIREFKRI 629 PF00385.14.fs: domain 2 of 2, from 575 to 629: score 52.6, E = 1.4e-13 *->yeVErILdhr..lrkggkksvplpekpitgleYLVKWkGypyeenTW eV+rILd +++++k+ ++ v +YLVKW+ +pye++TW KIAA1564 575 VEVDRILDEShsIDKDNGEPVI---------YYLVKWCSLPYEDSTW 612 EpeenLkackgfpelkieefeqr<-* E e++++ ki ef++ KIAA1564 613 ELKEDVDEG------KIREFKRI 629 PF00176.13.fs: domain 1 of 1, from 665 to 952: score 350.5, E = 2.6e-102 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleGvnWL + + n ++ILADEMGLGKT+Q+I++l KIAA1564 665 YQLEGVNWLLFNWYN--------RQNCILADEMGLGKTIQSIAFLQE 703 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns +++ + gpfLv++PlSt++nW++Ef +w+ +n++vy+g+ s KIAA1564 704 VYNVGI-H----GPFLVIAPLSTITNWEREFNTWTE--MNTIVYHGSLAS 746 rdqdrkdellrnvlkdggr.l....kfdvlitsYeiirkNkLlkdkdeLk r ++ +e + + ++g r +++ kfd lit++e+i++ d eL KIAA1564 747 RQMIQQYEM-YCKDSRG-RlIpgayKFDALITTFEMILS-----DCPELR 789 klfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQN i+wr vi+DE+ Hr+KN+++kl + lk+ +++lLTGTPlQN KIAA1564 790 E--IEWRCVIIDEA-HRLKNRNCKL--LDSLKHMD-LEHKVLLTGTPLQN 833 nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLada ++El+sLl+Fl P+ F s ++F k f + +e+ KIAA1564 834 TVEELFSLLHFLEPSQFPSE-------SEFLKDFGDLKTEE--------- 867 tefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvl +++ L+ ilkp +LRRlK+dvek+L p K+e+++ KIAA1564 868 ---------------QVQKLQAILKPMMLRRLKEDVEKNLAP--KQETII 900 fcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnlim ++el+ +Qk++Y+ +l +k++ ++ ++ g+ ++ +lln +m KIAA1564 901 EVELTNIQKKYYRAIL---EKNFSFLSKG----AGHT---NMPNLLNTMM 940 qLrKicNfHPyLf<-* +LrK+cN HPyL+ KIAA1564 941 ELRKCCN-HPYLI 952 PF00176.13.ls: domain 1 of 1, from 665 to 952: score 352.3, E = 7.4e-103 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQleGvnWL + + n ++ILADEMGLGKT+Q+I++l KIAA1564 665 YQLEGVNWLLFNWYN--------RQNCILADEMGLGKTIQSIAFLQE 703 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns +++ + gpfLv++PlSt++nW++Ef +w+ +n++vy+g+ s KIAA1564 704 VYNVGI-H----GPFLVIAPLSTITNWEREFNTWTE--MNTIVYHGSLAS 746 rdqdrkdellrnvlkdggr.l....kfdvlitsYeiirkNkLlkdkdeLk r ++ +e + + ++g r +++ kfd lit++e+i++ d eL KIAA1564 747 RQMIQQYEM-YCKDSRG-RlIpgayKFDALITTFEMILS-----DCPELR 789 klfinwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQN i+wr vi+DE+ Hr+KN+++kl + lk+ +++lLTGTPlQN KIAA1564 790 E--IEWRCVIIDEA-HRLKNRNCKL--LDSLKHMD-LEHKVLLTGTPLQN 833 nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLada ++El+sLl+Fl P+ F s ++F k f + +e+ KIAA1564 834 TVEELFSLLHFLEPSQFPSE-------SEFLKDFGDLKTEE--------- 867 tefLrykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvl +++ L+ ilkp +LRRlK+dvek+L p K+e+++ KIAA1564 868 ---------------QVQKLQAILKPMMLRRLKEDVEKNLAP--KQETII 900 fcelsklQkelYkkflkeeskdvkaindserreggkeknegksrllnlim ++el+ +Qk++Y+ +l +k++ ++ ++ g+ ++ +lln +m KIAA1564 901 EVELTNIQKKYYRAIL---EKNFSFLSKG----AGHT---NMPNLLNTMM 940 qLrKicNfHPyLf<-* +LrK+cN HPyL+ KIAA1564 941 ELRKCCN-HPYLI 952 PF00271.21.ls: domain 1 of 1, from 1019 to 1098: score 89.0, E = 1.3e-23 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l ++ + + r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA1564 1019 YLiQRRYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 1065 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA1564 1066 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1098 PF00271.21.fs: domain 1 of 1, from 1019 to 1098: score 87.0, E = 8.6e-25 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l ++ + + r++G+ + R++++++F + +s++ ++L++T+++g+ KIAA1564 1019 YLiQRRYLYERIDGRVRGNLRQAAIDRFSKPDSdrfVFLLCTRAGGL 1065 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi+++++++ I++d++wnp++++Q+ R++R+G KIAA1564 1066 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1098 PF07533.6.ls: domain 1 of 2, from 2161 to 2205: score 80.9, E = 3.7e-21 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr d e+R+pVin+ +G++L+G+dAP++ +Le+WL+ +P++ +v+Pr KIAA1564 2161 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEF----AVDPR 2203 st<-* ++ KIAA1564 2204 FL 2205 PF07533.6.fs: domain 1 of 2, from 2161 to 2205: score 79.0, E = 5.4e-22 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr d e+R+pVin+ +G++L+G+dAP++ +Le+WL+ +P++ +v+Pr KIAA1564 2161 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEF----AVDPR 2203 st<-* ++ KIAA1564 2204 FL 2205 PF07533.6.ls: domain 2 of 2, from 2230 to 2266: score 38.2, E = 2.5e-08 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr g+e+V+++n+++Gk++ +++++ ++r+L Pg+ +aP+ KIAA1564 2230 LGMEPVQTANSRNGKKG----HHTETVFNRVL---PGP-----IAPE 2264 st<-* s+ KIAA1564 2265 SS 2266 PF07533.6.fs: domain 2 of 2, from 2230 to 2266: score 36.5, E = 1.1e-09 *->dgeeRVpVinrktGkrLtGddAPkakdLerWLeenPgyVDlgevaPr g+e+V+++n+++Gk++ +++++ ++r+L Pg+ +aP+ KIAA1564 2230 LGMEPVQTANSRNGKKG----HHTETVFNRVL---PGP-----IAPE 2264 st<-* s+ KIAA1564 2265 SS 2266 //