hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06224902/chunk_1/iprscan-20080502-06224902.nocrc
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Query sequence: KIAA1562
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 400.3   1.1e-115   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      52   136 ..     1   121 []     9.4     0.28
SM00112    2/6     160   245 ..     1   121 []    82.5  5.2e-20
SM00112    3/6     269   353 ..     1   121 []    88.4  8.5e-22
SM00112    4/6     383   464 ..     1   121 []   100.1  2.6e-25
SM00112    5/6     488   575 ..     1   121 []   100.0  2.9e-25
SM00112    6/6     604   685 ..     1   121 []    20.0    0.026

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 52 to 136: score 9.4, E = 0.28
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v  + +  +   + +       v+++  ++++++l  +++++G    
    KIAA1562    52    VADVLLKLP---NPST------VRFRAMQrgnspLLVVNEDNG---- 85   

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +i++ +++DRE+ ++       ++ +  +e      p      
    KIAA1562    86 -------EISIGATIDREQLCQ-------KNLNCSIEFDVITLPT----- 116  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                            ++     + v+VlD+NDN P   
    KIAA1562   117 ---------EHLQLFHIEVEVLDINDNSP    136  

SM00112: domain 2 of 6, from 160 to 245: score 82.5, E = 5.2e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                       sA D+D g   eN+        tYs++ +++F I+ +t t g+   
    KIAA1562   160    DSAFDPDVG---ENSL------HTYSLSAndFFNIEVRTRTDGAK-- 195  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     + +++++++LDRE +         s+Y+L+ +A+D+G p+        
    KIAA1562   196 --YAELIVVRELDRELK---------SSYELQLTASDMGVPQ-------- 226  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          +s+++ + + + D NDN P   
    KIAA1562   227 -------RSGSSILKISISDSNDNSP    245  

SM00112: domain 3 of 6, from 269 to 353: score 88.4, E = 8.5e-22
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++AtD+D+g    Ngk      ++Ys++s+ +++  + F+Id+e G 
    KIAA1562   269    LNATDPDEG---ANGK------IVYSFSShvspkimeTFKIDSERG- 305  

                   ngpsLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgppp
                                t+ k+ D+E +         ++Y++ v+A+D G+++ 
    KIAA1562   306 -----------HLTLfKQVDYEIT---------KSYEIDVQAQDLGPNS- 334  

                   gdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                   +++ ++++V+DvNDN P   
    KIAA1562   335 --------------IPAHCKIIIKVVDVNDNKP    353  

SM00112: domain 4 of 6, from 383 to 464: score 100.1, E = 2.6e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      v++ D+Dsg    Ng+      +++ + ++++F++ ++  +n++   
    KIAA1562   383    VRVQDKDSG---LNGE------IVCKLHGhgHFKLQKTYENNYL--- 417  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                        i t+++LDRE++         seY+Ltv+A D+G+p+        
    KIAA1562   418 -----ILTNATLDREKR---------SEYSLTVIAEDRGTPS-------- 445  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls+   +tv++ D+NDN+P   
    KIAA1562   446 -------LSTVKHFTVQINDINDNPP    464  

SM00112: domain 5 of 6, from 488 to 575: score 100.0, E = 2.9e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+AtD+D g   eNg+      vtY+il++   +++ +++ +Idp++
    KIAA1562   488    VTATDPDLG---ENGQ------VTYTILEsfilgssittYVTIDPSN 525  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            i++++ +D+Ee          s+ t++veA+DgG+p 
    KIAA1562   526 G-----------AIYALRIFDHEEV---------SQITFVVEARDGGSPK 555  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                 +l s++tv+ t++D+NDN P   
    KIAA1562   556 --------------QLVSNTTVVLTIIDENDNVP    575  

SM00112: domain 6 of 6, from 604 to 685: score 20.0, E = 0.026
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      ++A+D+Dsg    N++      +++ i+ +++++ F Idp++     
    KIAA1562   604    IRAIDRDSG---VNAE------LSCAIVAgneenIFIIDPRSC---- 637  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +i+t+ + D              e +L v+ +D+G+p+     
    KIAA1562   638 -------DIHTNVSMDSVPY---------TEWELSVIIQDKGNPQ----- 666  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             l + + +   +    +      
    KIAA1562   667 ----------LHTKVLLKCMIFEYAESVT    685  

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