hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06224902/chunk_1/iprscan-20080502-06224902.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1562 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 298.4 1.3e-86 5 PF00028.8.fs Cadherin domain 297.2 2.9e-86 6 PF08266.2.ls Cadherin-like 23.4 6.5e-08 1 PF08266.2.fs Cadherin-like 26.2 4e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 29 115 .. 1 84 [] 23.4 6.5e-08 PF08266.2.fs 2/2 66 112 .. 35 81 .. 24.0 1.8e-06 PF00028.8.fs 2/6 143 238 .. 1 107 [] 58.8 2.9e-16 PF00028.8.ls 1/5 143 238 .. 1 107 [] 60.7 4.5e-15 PF00028.8.ls 2/5 252 346 .. 1 107 [] 82.7 1.1e-21 PF00028.8.fs 3/6 252 346 .. 1 107 [] 80.8 1.5e-22 PF00028.8.ls 3/5 366 457 .. 1 107 [] 55.9 1.3e-13 PF00028.8.fs 4/6 372 457 .. 7 107 .] 57.0 9.9e-16 PF00028.8.ls 4/5 471 568 .. 1 107 [] 69.8 8e-18 PF00028.8.fs 5/6 471 568 .. 1 107 [] 68.0 7.2e-19 PF00028.8.fs 6/6 587 667 .. 1 96 [. 27.8 2.3e-07 PF00028.8.ls 5/5 587 678 .. 1 107 [] 29.4 1.2e-05 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 29 to 115: score 23.4, E = 6.5e-08 *->gqirYSVpEEterGsfVGNl...AKDLGLdvqeLaaRgaRivSggnk + Y + EE Gs+++ l++++ D L + ++ ++R +gn KIAA1562 29 KNLKYRIYEEQRVGSVIARLsedVADVLLKLPNPSTVRFRAMQRGNS 75 qyFqlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +++ +n ++G+ + iDRE+LC + C+++++v+ KIAA1562 76 PLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLP 115 PF08266.2.fs: domain 2 of 2, from 66 to 112: score 24.0, E = 1.8e-06 *->gaRivSggnkqyFqlnletGdLlvnERiDREeLCgqsepCvLhlevl ++R +gn +++ +n ++G+ + iDRE+LC + C+++++v+ KIAA1562 66 RFRAMQRGNSPLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVI 112 <-* KIAA1562 - - PF00028.8.fs: domain 2 of 6, from 143 to 238: score 58.8, E = 2.9e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++++E a+vGt++ A D+D g N+ +Ys++ ++ F KIAA1562 143 IPIEISESAAVGTRIPLDSAFDPD--VGENSLHTYSLSAND---FFN 184 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg I+ +t + +g++ ++ ++++LDRE + YeL + A+D+ g KIAA1562 185 IEVRTRT-DGAkyaeLIVVRELDRELK--SSYELQLTASDM-------GV 224 pplsstatvtitVl<-* p +s+ + i++ KIAA1562 225 PQRSGSSILKISIS 238 PF00028.8.ls: domain 1 of 5, from 143 to 238: score 60.7, E = 4.5e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr +++++E a+vGt++ A D+D g N+ +Ys++ ++ F KIAA1562 143 IPIEISESAAVGTRIPLDSAFDPD--VGENSLHTYSLSAND---FFN 184 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg I+ +t + +g++ ++ ++++LDRE + YeL + A+D+ g KIAA1562 185 IEVRTRT-DGAkyaeLIVVRELDRELK--SSYELQLTASDM-------GV 224 pplsstatvtitVl<-* p +s+ + i++ KIAA1562 225 PQRSGSSILKISIS 238 PF00028.8.ls: domain 2 of 5, from 252 to 346: score 82.7, E = 1.1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ En+pvGt +l ++AtD+D +g+Ng+i+Ys++++ +++ KIAA1562 252 YIIQLLENSPVGTLLLDLNATDPD--EGANGKIVYSFSSHVSpkiME 296 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Id++ G +++ k++D+E + Ye+ v A+D g+ KIAA1562 297 TFKIDSERGH----LTLFKQVDYEIT--KSYEIDVQAQDL-------GPN 333 plsstatvtitVl<-* + + + ++i+V KIAA1562 334 SIPAHCKIIIKVV 346 PF00028.8.fs: domain 3 of 6, from 252 to 346: score 80.8, E = 1.5e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ En+pvGt +l ++AtD+D +g+Ng+i+Ys++++ +++ KIAA1562 252 YIIQLLENSPVGTLLLDLNATDPD--EGANGKIVYSFSSHVSpkiME 296 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Id++ G +++ k++D+E + Ye+ v A+D g+ KIAA1562 297 TFKIDSERGH----LTLFKQVDYEIT--KSYEIDVQAQDL-------GPN 333 plsstatvtitVl<-* + + + ++i+V KIAA1562 334 SIPAHCKIIIKVV 346 PF00028.8.ls: domain 3 of 5, from 366 to 457: score 55.9, E = 1.3e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + E+ p+ t+v+ v+++D+D +g+Ng i+ ++ g++ +F+ KIAA1562 366 EISYIFEGDPIDTFVALVRVQDKD--SGLNGEIVCKLHGHG---HFK 407 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ t +n +i t + LDRE++ +eY+Ltv+A D+ g+p+ls KIAA1562 408 LQK-TYENNYLILTNATLDREKR--SEYSLTVIAEDR-------GTPSLS 447 statvtitVl<-* ++ t+++ KIAA1562 448 TVKHFTVQIN 457 PF00028.8.fs: domain 4 of 6, from 372 to 457: score 57.0, E = 9.9e-16 *->EnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtG E+ p+ t+v+ v+++D+D +g+Ng i+ ++ g++ +F++++ t KIAA1562 372 EGDPIDTFVALVRVQDKD--SGLNGEIVCKLHGHG---HFKLQK-TY 412 dnegiisttkpLDREeifngeYeLtveAtDadpllasgggpplsstatvt +n +i t + LDRE++ +eY+Ltv+A D+ g+p+ls++ t KIAA1562 413 ENNYLILTNATLDREKR--SEYSLTVIAEDR-------GTPSLSTVKHFT 453 itVl<-* +++ KIAA1562 454 VQIN 457 PF00028.8.ls: domain 4 of 5, from 471 to 568: score 69.8, E = 8e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ ++En ++G ++tvtAtD+D lg Ng+++Y il+ +++ KIAA1562 471 YEFVISENNSPGAYITTVTATDPD--LGENGQVTYTILESFIlgssi 515 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +Idp +G i+ + D Ee ++ +++veA+D+ g KIAA1562 516 TTYVTIDPSNGA----IYALRIFDHEEV--SQITFVVEARDG------GS 553 gpplsstatvtitVl<-* ++ l s +tv+ t++ KIAA1562 554 PKQLVSNTTVVLTII 568 PF00028.8.fs: domain 5 of 6, from 471 to 568: score 68.0, E = 7.2e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ ++En ++G ++tvtAtD+D lg Ng+++Y il+ +++ KIAA1562 471 YEFVISENNSPGAYITTVTATDPD--LGENGQVTYTILESFIlgssi 515 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg +Idp +G i+ + D Ee ++ +++veA+D+ g KIAA1562 516 TTYVTIDPSNGA----IYALRIFDHEEV--SQITFVVEARDG------GS 553 gpplsstatvtitVl<-* ++ l s +tv+ t++ KIAA1562 554 PKQLVSNTTVVLTII 568 PF00028.8.fs: domain 6 of 6, from 587 to 667: score 27.8, E = 2.3e-07 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++++p +a +G +v++++A+D+D +g N+ ++ +i+ gn++++F KIAA1562 587 AEITIPKGAESGFHVTRIRAIDRD--SGVNAELSCAIVAGNEENIFI 631 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl< Idp++ d i t + D + e eL+v+ +D g p l KIAA1562 632 IDPRSCD----IHTNVSMDSVPY--TEWELSVIIQDK-------GNPQL 667 -* KIAA1562 - - PF00028.8.ls: domain 5 of 5, from 587 to 678: score 29.4, E = 1.2e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++++p +a +G +v++++A+D+D +g N+ ++ +i+ gn++++F KIAA1562 587 AEITIPKGAESGFHVTRIRAIDRD--SGVNAELSCAIVAGNEENIFI 631 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Idp++ d i t + D + e eL+v+ +D g p l KIAA1562 632 IDPRSCD----IHTNVSMDSVPY--TEWELSVIIQDK-------GNPQLH 668 statvtitVl<-* + + + + + KIAA1562 669 TKVLLKCMIF 678 //