hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06192841/chunk_1/iprscan-20080502-06192841.nocrc
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Query sequence: KIAA1560
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00563                                                  96.9    2.3e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00563    1/1      58   191 ..     1   135 []    96.9  2.3e-24

Alignments of top-scoring domains:
SM00563: domain 1 of 1, from 58 to 191: score 96.9, E = 2.3e-24
                   *->alvvaNHqSylDplvlsallprk.rrvrfvakkelfkiPllGwllrl
                      +l+++ H+S++D+l+l ++l++++++ +++a  + ++iP++++l+++
    KIAA1560    58    LLFLPVHRSHIDYLLLTFILFCHnIKAPYIASGNNLNIPIFSTLIHK 104  

                   agaifidRsng.......drkaraalreavrryFEnhellkegewlviFP
                   +g++fi+R+ ++++++++d ++ra l+ ++       ell++ + l iF 
    KIAA1560   105 LGGFFIRRRLDetpdgrkDVLYRALLHGHIV------ELLRQQQFLEIFL 148  

                   EGTrsrdgkldgeeerlkllpfKkGafrlAlkag......dvpivPvais
                   EGTrsr g         k+   ++G  ++++++++++  +d+ i+Pv is
    KIAA1560   149 EGTRSRSG---------KTSCARAGLLSVVVDTLstnvipDILIIPVGIS 189  

                   gt<-*
                   ++   
    KIAA1560   190 YD    191  

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