hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06192841/chunk_1/iprscan-20080502-06192841.nocrc
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Query sequence: KIAA1560
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01553.11.ls   Acyltransferase                         124.8    2.2e-34   1
PF01553.11.fs   Acyltransferase                         122.9    8.5e-34   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01553.11.fs     1/1      39   189 ..     1   158 []   122.9  8.5e-34
PF01553.11.ls     1/1      39   189 ..     1   158 []   124.8  2.2e-34

Alignments of top-scoring domains:
PF01553.11.fs: domain 1 of 1, from 39 to 189: score 122.9, E = 8.5e-34
                   *->rvevhglEnlpr....kgpaivvaNHqSylDplvlslllykrhpwlp
                      ++    lE +++ ++++ p ++ + H+S++D+l+l ++l++++    
    KIAA1560    39    QIHKGQLEMVKAatetNLPLLFLPVHRSHIDYLLLTFILFCHN---I 82   

                   rrlvfvakkelftvpllgwlmrllgaifidRKkHmrf.p.l.ekkrkdar
                   + ++++ + + +++p++++l+ +lg +fi+R    r++++++++k+  +r
    KIAA1560    83 KAPYIASGNN-LNIPIFSTLIHKLGGFFIRR----RLdEtPdGRKDVLYR 127  

                   aslk.elvelllraGklpvviFPEGTrlsrgkrgellplpfKkGafrlAl
                   a+l++++vell r+ ++ ++iF EGTr sr+  g++   + ++G++++++
    KIAA1560   128 ALLHgHIVELL-RQQQF-LEIFLEGTR-SRS--GKT--SCARAGLLSVVV 170  

                   ellkhsvgagvpIvPvais<-*
                   ++l+ +v+ ++ I+Pv is   
    KIAA1560   171 DTLSTNVIPDILIIPVGIS    189  

PF01553.11.ls: domain 1 of 1, from 39 to 189: score 124.8, E = 2.2e-34
                   *->rvevhglEnlpr....kgpaivvaNHqSylDplvlslllykrhpwlp
                      ++    lE +++ ++++ p ++ + H+S++D+l+l ++l++++    
    KIAA1560    39    QIHKGQLEMVKAatetNLPLLFLPVHRSHIDYLLLTFILFCHN---I 82   

                   rrlvfvakkelftvpllgwlmrllgaifidRKkHmrf.p.l.ekkrkdar
                   + ++++ + + +++p++++l+ +lg +fi+R    r++++++++k+  +r
    KIAA1560    83 KAPYIASGNN-LNIPIFSTLIHKLGGFFIRR----RLdEtPdGRKDVLYR 127  

                   aslk.elvelllraGklpvviFPEGTrlsrgkrgellplpfKkGafrlAl
                   a+l++++vell r+ ++ ++iF EGTr sr+  g++   + ++G++++++
    KIAA1560   128 ALLHgHIVELL-RQQQF-LEIFLEGTR-SRS--GKT--SCARAGLLSVVV 170  

                   ellkhsvgagvpIvPvais<-*
                   ++l+ +v+ ++ I+Pv is   
    KIAA1560   171 DTLSTNVIPDILIIPVGIS    189  

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