hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06174484/chunk_1/iprscan-20080502-06174484.nocrc
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Query sequence: KIAA1559
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 343.1    1.9e-98  13
SM00349                                                 127.5    1.5e-33   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      17    78 ..     1    62 []   127.5  1.5e-33
SM00355      1/13    183   205 ..     1    23 []    28.4  0.00098
SM00355      2/13    211   233 ..     1    23 []    26.9   0.0029
SM00355      3/13    239   261 ..     1    23 []    27.6   0.0017
SM00355      4/13    267   289 ..     1    23 []    28.8  0.00075
SM00355      5/13    295   317 ..     1    23 []    24.3    0.017
SM00355      6/13    323   345 ..     1    23 []    25.7   0.0065
SM00355      7/13    351   373 ..     1    23 []    21.2     0.15
SM00355      8/13    379   401 ..     1    23 []    31.7   0.0001
SM00355      9/13    407   429 ..     1    23 []    27.2   0.0023
SM00355     10/13    435   457 ..     1    23 []    26.8    0.003
SM00355     11/13    463   485 ..     1    23 []    22.6    0.056
SM00355     12/13    491   513 ..     1    23 []    26.4   0.0039
SM00355     13/13    519   541 ..     1    23 []    25.6   0.0068

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 17 to 78: score 127.5, E = 1.5e-33
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF+DVA+dFsqEEWe LDpaQr+LYRdVM+ENYsn  SLG +++sk
    KIAA1559    17    VTFRDVAIDFSQEEWEFLDPAQRDLYRDVMWENYSNFISLG-PSISK 62   

                   pdliskL.EqgeEpwi<-*
                   pd+i++L+E+++Ep++   
    KIAA1559    63 PDVITLLdEERKEPGM    78   

SM00355: domain 1 of 13, from 183 to 205: score 28.4, E = 0.00098
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k+f +++ L +H+r+H   
    KIAA1559   183    YECKE-CRKTFIRRsTLSQHLRIH    205  

SM00355: domain 2 of 13, from 211 to 233: score 26.9, E = 0.0029
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg+ f+++ +L+rH + H   
    KIAA1559   211    YKCKE-CGQAFRQRaHLIRHHKLH    233  

SM00355: domain 3 of 13, from 239 to 261: score 27.6, E = 0.0017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L++H+r H   
    KIAA1559   239    YECKE-CGKAFTVLqELTQHQRLH    261  

SM00355: domain 4 of 13, from 267 to 289: score 28.8, E = 0.00075
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L rH+r+H   
    KIAA1559   267    YECKE-CGKAFRVHqQLARHQRIH    289  

SM00355: domain 5 of 13, from 295 to 317: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+f++ ++L+rH+r H   
    KIAA1559   295    YECKD-CGKTFRQCtHLTRHQRLH    317  

SM00355: domain 6 of 13, from 323 to 345: score 25.7, E = 0.0065
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   ++L+ H+++H   
    KIAA1559   323    YECKE-CGKAFVCGpDLRVHQKIH    345  

SM00355: domain 7 of 13, from 351 to 373: score 21.2, E = 0.15
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L+ H+ +H   
    KIAA1559   351    YECKE-CGKAFRICqQLTVHQSIH    373  

SM00355: domain 8 of 13, from 379 to 401: score 31.7, E = 0.0001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+ +++L+rH+r+H   
    KIAA1559   379    YECKE-CGKTFRLRqQLVRHQRIH    401  

SM00355: domain 9 of 13, from 407 to 429: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C k+fss+++L+ H+ +H   
    KIAA1559   407    YECME-CWKTFSSYsQLISHQSIH    429  

SM00355: domain 10 of 13, from 435 to 457: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L++H+ +H   
    KIAA1559   435    YECEE-CGKAFRLLsQLTQHQSIH    457  

SM00355: domain 11 of 13, from 463 to 485: score 22.6, E = 0.056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k f+  ++L++H+ +H   
    KIAA1559   463    YECKE-CRKPFRLLsQLTQHQSIH    485  

SM00355: domain 12 of 13, from 491 to 513: score 26.4, E = 0.0039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ ++ L++H+r+H   
    KIAA1559   491    YECKE-CGKAFRLYsFLTQHQRIH    513  

SM00355: domain 13 of 13, from 519 to 541: score 25.6, E = 0.0068
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k f+++++L++H+++H   
    KIAA1559   519    YKCKE-CKKAFRQHsHLTQHQKIH    541  

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