hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06160756/chunk_1/iprscan-20080502-06160756.nocrc
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Query sequence: KIAA1558
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04499.6.ls SIT4 phosphatase-associated protein            678.1     6e-201   1
PF04499.6.fs SIT4 phosphatase-associated protein            676.6   1.7e-200   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04499.6.fs   1/1     131   516 ..     1   599 []   676.6 1.7e-200
PF04499.6.ls   1/1     131   516 ..     1   599 []   678.1   6e-201

Alignments of top-scoring domains:
PF04499.6.fs: domain 1 of 1, from 131 to 516: score 676.6, E = 1.7e-200
                   *->necLLdrktdqiltFlkkkdnfVdklLkHIgisaiECLMDfLLrlis
                      +++L++rk++qi++Flkkk++fVd+++kHIg+sai   MD+LLrl++
    KIAA1558   131    LSILISRKPEQIVDFLKKKHDFVDLIIKHIGTSAI---MDLLLRLLT 174  

                   TdDkpesrytgViqWLndqnLiekLvdlLhpSeYdpEYmldvQsnaadfL
                   ++++p++r ++V++WLn++++i++Lv+++hpS+ ++    d++sna+++L
    KIAA1558   175 CIEPPQPR-QDVLNWLNEEKIIQRLVEIVHPSQ-EE----DRHSNASQSL 218  

                   CaiiriSrDKLYIMNskldiqssIGPneLtrqLvSpetieqLldimlVEE
                   C+i+r+Sr      +++l+iq+s++P++L+++L+++e+ieqLl++++   
    KIAA1558   219 CEIVRLSR------DQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIF--- 259  

                   GCPAEdsrsekggsaLvngvsiiIELlrKnNSdvsYDfvnslstqLEEie
                          ++ek++sa+v++++i+++Ll++++        +++++++ Ei+
    KIAA1558   260 -------HKEKNESAIVSAIQILLTLLETRR--------PTFEGHI-EIC 293  

                   shLIEERHYSYGLMRPCMDNPPteRdPqiylgellegfLaerLpdFlqTL
                   ++                   +++++++++++++le++ ++rL++F++ L
    KIAA1558   294 PP-------------------GMSHSACSVNKSVLEAI-RGRLGSFHE-L 322  

                   LlkpekesvklPLLeTtyGklePPLGfeRlKIvELIAeLLhcsnmallnE
                   Ll+p+k+sv    ++Tt+G+l+PP+G++Rl++++LI++LL++++++++ +
    KIAA1558   323 LLEPPKKSV----MKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGD 368  

                   prGEdIvreRDklRdklfehdtikesnarelvmkdeddnddtvednneed
                                                                     
    KIAA1558     - -------------------------------------------------- -    

                   lknleDaNdsideeeqadtikskvkdtnksltnvdseeseaepvdenngk
                                                                     
    KIAA1558     - -------------------------------------------------- -    

                   vkaddnddDDeedyfEipydsesieeklRslPvVGDlLKIkLiKdlgvip
                                                            L+ +l+ i 
    KIAA1558   369 -----------------------------------------LM-ELNSIG 376  

                   riLDLFFeYPWNNFLHnvVediiqqiLnspmdegyN...........sfL
                    iL++FF+Y+WNNFLH++Ve +i++iL sp+++++N + ++++++++++L
    KIAA1558   377 VILNMFFKYTWNNFLHTQVEICIALILASPFENTENatitdqdstgdNLL 426  

                   vkhLLqecdSyrFLiekIleadedpnldgdiqsdFilpgskdsveasgkg
                   +khL+q+c+    Lie+Ilea+e++                ++++a+  g
    KIAA1558   427 LKHLFQKCQ----LIERILEAWEMN----------------EKKQAE--G 454  

                   glRlGYMGHLTlIAeeivkfselypssniqiqllkelpilledekWeeyv
                   g+R+GYMGHLT+IA++iv+ ++++p+s++++ql+k+lp++++ e+We+++
    KIAA1558   455 GRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVR-ERWETFC 503  

                   edvLedtrekyNv<-*
                   +++L +t+++++v   
    KIAA1558   504 TSSLGETNKRNTV    516  

PF04499.6.ls: domain 1 of 1, from 131 to 516: score 678.1, E = 6e-201
                   *->necLLdrktdqiltFlkkkdnfVdklLkHIgisaiECLMDfLLrlis
                      +++L++rk++qi++Flkkk++fVd+++kHIg+sai   MD+LLrl++
    KIAA1558   131    LSILISRKPEQIVDFLKKKHDFVDLIIKHIGTSAI---MDLLLRLLT 174  

                   TdDkpesrytgViqWLndqnLiekLvdlLhpSeYdpEYmldvQsnaadfL
                   ++++p++r ++V++WLn++++i++Lv+++hpS+ ++    d++sna+++L
    KIAA1558   175 CIEPPQPR-QDVLNWLNEEKIIQRLVEIVHPSQ-EE----DRHSNASQSL 218  

                   CaiiriSrDKLYIMNskldiqssIGPneLtrqLvSpetieqLldimlVEE
                   C+i+r+Sr      +++l+iq+s++P++L+++L+++e+ieqLl++++   
    KIAA1558   219 CEIVRLSR------DQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIF--- 259  

                   GCPAEdsrsekggsaLvngvsiiIELlrKnNSdvsYDfvnslstqLEEie
                          ++ek++sa+v++++i+++Ll++++        +++++++ Ei+
    KIAA1558   260 -------HKEKNESAIVSAIQILLTLLETRR--------PTFEGHI-EIC 293  

                   shLIEERHYSYGLMRPCMDNPPteRdPqiylgellegfLaerLpdFlqTL
                   ++                   +++++++++++++le++ ++rL++F++ L
    KIAA1558   294 PP-------------------GMSHSACSVNKSVLEAI-RGRLGSFHE-L 322  

                   LlkpekesvklPLLeTtyGklePPLGfeRlKIvELIAeLLhcsnmallnE
                   Ll+p+k+sv    ++Tt+G+l+PP+G++Rl++++LI++LL++++++++ +
    KIAA1558   323 LLEPPKKSV----MKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGD 368  

                   prGEdIvreRDklRdklfehdtikesnarelvmkdeddnddtvednneed
                                                                     
    KIAA1558     - -------------------------------------------------- -    

                   lknleDaNdsideeeqadtikskvkdtnksltnvdseeseaepvdenngk
                                                                     
    KIAA1558     - -------------------------------------------------- -    

                   vkaddnddDDeedyfEipydsesieeklRslPvVGDlLKIkLiKdlgvip
                                                            L+ +l+ i 
    KIAA1558   369 -----------------------------------------LM-ELNSIG 376  

                   riLDLFFeYPWNNFLHnvVediiqqiLnspmdegyN...........sfL
                    iL++FF+Y+WNNFLH++Ve +i++iL sp+++++N + ++++++++++L
    KIAA1558   377 VILNMFFKYTWNNFLHTQVEICIALILASPFENTENatitdqdstgdNLL 426  

                   vkhLLqecdSyrFLiekIleadedpnldgdiqsdFilpgskdsveasgkg
                   +khL+q+c+    Lie+Ilea+e++                ++++a+  g
    KIAA1558   427 LKHLFQKCQ----LIERILEAWEMN----------------EKKQAE--G 454  

                   glRlGYMGHLTlIAeeivkfselypssniqiqllkelpilledekWeeyv
                   g+R+GYMGHLT+IA++iv+ ++++p+s++++ql+k+lp++++ e+We+++
    KIAA1558   455 GRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVR-ERWETFC 503  

                   edvLedtrekyNv<-*
                   +++L +t+++++v   
    KIAA1558   504 TSSLGETNKRNTV    516  

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