hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09453924/chunk_1/iprscan-20080909-09453924.nocrc
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Query sequence: KIAA1555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 113.7    2.1e-29   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/5     201   223 ..     1    23 []    24.1    0.019
SM00355      2/5     229   251 ..     1    23 []    25.1     0.01
SM00355      3/5     652   672 ..     1    23 []     9.8       25
SM00355      4/5    1763  1785 ..     1    23 []    27.3   0.0021
SM00355      5/5    1791  1815 ..     1    23 []    27.4   0.0019

Alignments of top-scoring domains:
SM00355: domain 1 of 5, from 201 to 223: score 24.1, E = 0.019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C++ +  ++ L++H+r+H   
    KIAA1555   201    YICQY-CSRPCAKPsVLQKHIRSH    223  

SM00355: domain 2 of 5, from 229 to 251: score 25.1, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C   Cg+sf++k++L +H ++H   
    KIAA1555   229    YPCGP-CGFSFKTKsNLYKHRKSH    251  

SM00355: domain 3 of 5, from 652 to 672: score 9.8, E = 25
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i Cg +++ +++++ H +     
    KIAA1555   652    YECNI-CGARYKKRdNYEAHKK--    672  

SM00355: domain 4 of 5, from 1763 to 1785: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg +++ ++ Lk+H+r+H   
    KIAA1555  1763    YVCEE-CGIRCKKPsMLKKHIRTH    1785 

SM00355: domain 5 of 5, from 1791 to 1815: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C++ C++ f++k++L++Hm+++ H   
    KIAA1555  1791    YVCKH-CHFAFKTKgNLTKHMKskAH    1815 

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