hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09453924/chunk_1/iprscan-20080909-09453924.nocrc
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Query sequence: KIAA1555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         138.0    2.3e-38   5
PF00096.16.fs Zinc finger, C2H2 type                         128.2    2.1e-35   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/5     201   223 ..     1    24 []    24.8  6.2e-05
PF00096.16.ls   1/5     201   223 ..     1    24 []    26.8  7.2e-05
PF00096.16.ls   2/5     229   251 ..     1    24 []    27.4  4.8e-05
PF00096.16.fs   2/5     229   251 ..     1    24 []    25.4  4.5e-05
PF00096.16.ls   3/5     652   675 ..     1    24 []    23.1  0.00093
PF00096.16.fs   4/5    1763  1785 ..     1    24 []    30.4  2.4e-06
PF00096.16.ls   4/5    1763  1785 ..     1    24 []    32.4  1.5e-06
PF00096.16.ls   5/5    1791  1815 ..     1    24 []    28.4  2.3e-05
PF00096.16.fs   5/5    1791  1815 ..     1    24 []    26.5  2.4e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 5, from 201 to 223: score 24.8, E = 6.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C + +  +s L++H+r+H   
    KIAA1555   201    YICQ-YCSRPCAKPSVLQKHIRSH    223  

PF00096.16.ls: domain 1 of 5, from 201 to 223: score 26.8, E = 7.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C + +  +s L++H+r+H   
    KIAA1555   201    YICQ-YCSRPCAKPSVLQKHIRSH    223  

PF00096.16.ls: domain 2 of 5, from 229 to 251: score 27.4, E = 4.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C   Cg sF++ksnL +H+++H   
    KIAA1555   229    YPCG-PCGFSFKTKSNLYKHRKSH    251  

PF00096.16.fs: domain 2 of 5, from 229 to 251: score 25.4, E = 4.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C   Cg sF++ksnL +H+++H   
    KIAA1555   229    YPCG-PCGFSFKTKSNLYKHRKSH    251  

PF00096.16.ls: domain 3 of 5, from 652 to 675: score 23.1, E = 0.00093
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +Cg +++ ++n+++H++  +   
    KIAA1555   652    YECN-ICGARYKKRDNYEAHKKYyC    675  

PF00096.16.fs: domain 4 of 5, from 1763 to 1785: score 30.4, E = 2.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg +++ +s Lk+H+rtH   
    KIAA1555  1763    YVCE-ECGIRCKKPSMLKKHIRTH    1785 

PF00096.16.ls: domain 4 of 5, from 1763 to 1785: score 32.4, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg +++ +s Lk+H+rtH   
    KIAA1555  1763    YVCE-ECGIRCKKPSMLKKHIRTH    1785 

PF00096.16.ls: domain 5 of 5, from 1791 to 1815: score 28.4, E = 2.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+C+ +C+ +F++k+nL++H++++ H   
    KIAA1555  1791    YVCK-HCHFAFKTKGNLTKHMKSkaH    1815 

PF00096.16.fs: domain 5 of 5, from 1791 to 1815: score 26.5, E = 2.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+C+ +C+ +F++k+nL++H++++ H   
    KIAA1555  1791    YVCK-HCHFAFKTKGNLTKHMKSkaH    1815 

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