hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06021157/chunk_1/iprscan-20080502-06021157.nocrc
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Query sequence: KIAA1550
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00429                                                 217.5    1.2e-60   4
SM00423                                                 136.4    3.1e-36   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00423    1/3      77   127 ..     1    56 []    62.5  5.3e-14
SM00423    2/3     223   270 ..     1    56 []    38.3    1e-06
SM00423    3/3     371   424 ..     1    56 []    35.5  7.2e-06
SM00429    1/4     425   519 ..     1   111 []    68.9  6.2e-16
SM00429    2/4     521   605 ..     1   111 []    69.6  3.9e-16
SM00429    3/4     607   707 ..     1   111 []    63.6  2.5e-14
SM00429    4/4     709   798 ..     1   111 []    15.3        1

Alignments of top-scoring domains:
SM00423: domain 1 of 3, from 77 to 127: score 62.5, E = 5.3e-14
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C qy  +sC+eCl+++dp+ CgWC+++++Ctr+erC +++++r  +
    KIAA1550    77    SCGQY--QSCGECLGSGDPH-CGWCVLHNTCTRKERCERSKEPRRFA 120  

                   ssgpssqCp<-*
                   s    +qC    
    KIAA1550   121 SE--MKQCV    127  

SM00423: domain 2 of 3, from 223 to 270: score 38.3, E = 1e-06
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      +Cs++   sC +C++++ +  C+WC++++ Ct+ +  C+ ++g++  
    KIAA1550   223    NCSVH--NSCLSCVESPYR--CHWCKYRHVCTHDpKTCSFQEGRVKL 265  

                   wssgpssqCp<-*
                    +      Cp   
    KIAA1550   266 PE-----DCP    270  

SM00423: domain 3 of 3, from 371 to 424: score 35.5, E = 7.2e-06
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C + +  sC+ Cl a++++ CgWC + g+Ct +++C+     ++ w
    KIAA1550   371    KCGAMR-ESCGLCLKADPDFACGWCQGPGQCTLRQHCPA---QESQW 413  

                   ssg..pssqCp<-*
                   + +++  s+C+   
    KIAA1550   414 LELsgAKSKCT    424  

SM00429: domain 1 of 4, from 425 to 519: score 68.9, E = 6.2e-16
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P+It+i P +Gp++GGt  +t++G nL+  + ++   v+v+    +
    KIAA1550   425    NPRITEIIPVTGPREGGT-KVTIRGENLGLEFRDIASHVKVA----G 466  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   v+C++l + ++    +++ivC+++++     +   + v+   +v +++ +
    KIAA1550   467 VECSPLVDGYI---PAEQIVCEMGEAKP---SQHAGFVEI--CVAVCRPE 508  

                   vrtelsppspFtYv<-*
                   +++    +s+++Y    
    KIAA1550   509 FMAR---SSQLYYF    519  

SM00429: domain 2 of 4, from 521 to 605: score 69.6, E = 3.9e-16
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       ++ ++++Ps+Gp sGGt  +t++G+nL++ gs v+v +g      +
    KIAA1550   521    TLTLSDLKPSRGPMSGGT-QVTITGTNLNA-GSNVVVMFG------K 559  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC f ++      s++ ivC t ++      + + +v    +v++d+++
    KIAA1550   560 QPCLFHRR------SPSYIVCNTTSSD----EVLEMKV----SVQVDRAK 595  

                   vrtelsppspFtYv<-*
                   ++++    + F+Yv   
    KIAA1550   596 IHQD----LVFQYV    605  

SM00429: domain 3 of 4, from 607 to 707: score 63.6, E = 2.5e-14
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      dP+I ri+P+++++sG+t  i + G++Ld  ++ + +r + gG++  
    KIAA1550   607    DPTIVRIEPEWSIVSGNT-PIAVWGTHLDL-IQNPQIRAKHGGKeH- 650  

                   evpCtflpsdvhGkdsstaivCrtPpyln.qsp..gpgsvpvrvtgevgf
                    + C++l++        t+++C +P+ + ++++++   ++p     e+gf
    KIAA1550   651 INICEVLNA--------TEMTCQAPALALgPDHqsDLTERPE----EFGF 688  

                   dnggvrtel.sppspFtYv<-*
                   ++++v+++l ++  +FtY+   
    KIAA1550   689 ILDNVQSLLiLNKTNFTYY    707  

SM00429: domain 4 of 4, from 709 to 798: score 15.3, E = 1
                   *->dPvItrisPssGplsG.GteritlcGknLdsdgsvvfvrvgvgGr.v
                      +Pv++++ Ps      +Gt  i l+GknL + +    v +++    +
    KIAA1550   709    NPVFEAFGPSGILELKpGT-PIILKGKNLIPPVAGGNVKLNYTVLvG 754  

                   WevpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdn
                    e pCt++        s+++++C++P       + g  +v     + +  
    KIAA1550   755 -EKPCTVTV-------SDVQLLCESPN------LIGRHKV----MARV-- 784  

                   ggvrtelsppspFtYv<-*
                   gg++   sp + +      
    KIAA1550   785 GGMEY--SPGMVYIAP    798  

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