hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05483279/chunk_1/iprscan-20080502-05483279.nocrc
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Query sequence: KIAA1542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  62.6    5.2e-14   1
SM00184                                                  39.2    5.7e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/2     113   153 ..     1    23 []    33.3  3.3e-05
SM00249    1/1     190   236 ..     1    39 []    62.6  5.2e-14
SM00184    2/2     191   235 ..     1    23 []     5.9      4.3

Alignments of top-scoring domains:
SM00184: domain 1 of 2, from 113 to 153: score 33.3, E = 3.3e-05
                   *->CpICle.......pvvlpCgH.FCr.Ci.........CPlC<-*
                      CpICl+  +++   +  +C H FC +Ci +++++ ++CP+    
    KIAA1542   113    CPICLNafrdqavGTPENCAHyFCLdCIvewsknansCPVD    153  

SM00249: domain 1 of 1, from 190 to 236: score 62.6, E = 5.2e-14
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C+vCg+++++++ll+Cd gCd  yH++Cl+ppl ++p ++w+Cp+C
    KIAA1542   190    FCeVCGRsdreDrLLLCD-GCDAGYHMeCLDPPLQeVPVDeWFCPEC 235  

                   k<-*
                       
    KIAA1542   236 A    236  

SM00184: domain 2 of 2, from 191 to 235: score 5.9, E = 4.3
                   *->CpICle.......pvvlpCgH.FCr.Ci.............CPlC<-
                      C +C  ++++++ + +  C  +++ +C++++ ++ + +++ CP C  
    KIAA1542   191    CEVCGRsdredrlLLCDGCDAgYHMeCLdpplqevpvdewfCPEC   235  

                   *
                    
    KIAA1542     -   -    

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