hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05483279/chunk_1/iprscan-20080502-05483279.nocrc
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Query sequence: KIAA1542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00628.19.fs PHD-finger                                      65.6    1.2e-20   1
PF00628.19.ls PHD-finger                                      67.5      4e-17   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           26.8    4.9e-09   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           25.9    0.00013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     113   152 ..     1    49 [.    26.8  4.9e-09
PF00097.15.ls   1/1     113   153 ..     1    50 []    25.9  0.00013
PF00628.19.fs   1/1     190   238 ..     1    51 []    65.6  1.2e-20
PF00628.19.ls   1/1     190   238 ..     1    51 []    67.5    4e-17

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 113 to 152: score 26.8, E = 4.9e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICl+ + +    + +   C H      fC +C+++w +  + ++C
    KIAA1542   113    CPICLNAFRDQA--VGTPENCAHY-----FCLDCIVEWSK--NANSC 150  

                   pl<-*
                   p+   
    KIAA1542   151 PV    152  

PF00097.15.ls: domain 1 of 1, from 113 to 153: score 25.9, E = 0.00013
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ICl+ + +    + +   C H      fC +C+++w +  + ++C
    KIAA1542   113    CPICLNAFRDQA--VGTPENCAHY-----FCLDCIVEWSK--NANSC 150  

                   plC<-*
                   p+    
    KIAA1542   151 PVD    153  

PF00628.19.fs: domain 1 of 1, from 190 to 238: score 65.6, E = 1.2e-20
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      +C vCg+  sd +++ll+CDgCd  +H++Cl+ppl+  e+p ++W+C
    KIAA1542   190    FCEVCGR--SDREDRLLLCDGCDAGYHMECLDPPLQ--EVPVdeWFC 232  

                   peCkpk<-*
                   peC +    
    KIAA1542   233 PECAAP    238  

PF00628.19.ls: domain 1 of 1, from 190 to 238: score 67.5, E = 4e-17
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      +C vCg+  sd +++ll+CDgCd  +H++Cl+ppl+  e+p ++W+C
    KIAA1542   190    FCEVCGR--SDREDRLLLCDGCDAGYHMECLDPPLQ--EVPVdeWFC 232  

                   peCkpk<-*
                   peC +    
    KIAA1542   233 PECAAP    238  

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