hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05465168/chunk_1/iprscan-20080502-05465168.nocrc
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Query sequence: KIAA1541
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  54.1    1.8e-11   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      51    86 ..     1    46 []     8.6       22
SM00320    2/7     113   153 ..     1    46 []    11.2      8.2
SM00320    3/7     195   234 ..     1    46 []    15.0        2
SM00320    4/7     245   285 ..     1    46 []     7.4       33
SM00320    5/7     304   342 ..     1    46 []     5.3       73
SM00320    6/7     369   400 ..     1    46 []     0.3  4.5e+02
SM00320    7/7     436   473 ..     1    46 []     6.3       50

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 51 to 86: score 8.6, E = 22
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +  + +       +++v f+ +g      +lla+g++ g + ++
    KIAA1541    51    PgHCPLKSD------IISTVEFNYSG------DLLATGDkGGRVVIF 85   

                   d<-*
                       
    KIAA1541    86 Q    86   

SM00320: domain 2 of 7, from 113 to 153: score 11.2, E = 8.2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l++l+  +    ++ +++ p  ++     +++ + +D+ti+lW
    KIAA1541   113    EfDYLKSLE-IEE--KINKIRWLPQQNA----AHFLLSTnDKTIKLW 152  

                   d<-*
                   +   
    KIAA1541   153 K    153  

SM00320: domain 3 of 7, from 195 to 234: score 15.0, E = 2
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW
                      + ++ r++ ++Ht    ++s+++++d+      +  +s++D  i lW
    KIAA1541   195    EaSPRRIFAnAHTY--HINSISVNSDH------ETYLSADDLRINLW 233  

                   d<-*
                   +   
    KIAA1541   234 H    234  

SM00320: domain 4 of 7, from 245 to 285: score 7.4, E = 33
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + ++  t    +t+  f+p+       n+++ +s+ gtirl 
    KIAA1541   245    VdIKPANMEELTE--VITAAEFHPHQ-----CNVFVYSSsKGTIRLC 284  

                   d<-*
                   d   
    KIAA1541   285 D    285  

SM00320: domain 5 of 7, from 304 to 342: score 5.3, E = 73
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + ++   +  ++++v+fs++g      +++ + +  + +++W
    KIAA1541   304    DpSSRSFFSEIIS--SISDVKFSHSG------RYMMTRDyLS-VKVW 341  

                   d<-*
                   d   
    KIAA1541   342 D    342  

SM00320: domain 6 of 7, from 369 to 400: score 0.3, E = 4.5e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++    +++          ++++ ++      + + +gs ++  r++
    KIAA1541   369    NdCIFDKFE----------CCWNGSD------SAIMTGSyNNFFRMF 399  

                   d<-*
                   d   
    KIAA1541   400 D    400  

SM00320: domain 7 of 7, from 436 to 473: score 6.3, E = 50
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   + +l+  ++   +++ a++p +      n++a++ +++ ++++
    KIAA1541   436    DeISVDSLD-FNK--KILHTAWHPVD------NVIAVAAtNN-LYIF 472  

                   d<-*
                       
    KIAA1541   473 Q    473  

//