# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj00652.fasta.huge -Q ../query/KIAA1540.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1540, 424 aa
 vs ./tmplib.25089 library

1987081 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.1215+/-0.00467; mu= 17.3402+/- 0.319
 mean_var=79.4489+/-18.914, 0's: 0 Z-trim: 1  B-trim: 7 in 1/39
 Lambda= 0.143890

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0001  ( 347 res)   ha00008                     ( 347)  196 50.1 2.5e-07


>>KIAA0001  ( 347 res)   ha00008                          (347 aa)
 initn: 134 init1:  91 opt: 196  Z-score: 223.4  bits: 50.1 E(): 2.5e-07
Smith-Waterman score: 216;  19.444% identity (56.481% similar) in 324 aa overlap (66-373:24-328)

          40        50        60        70         80        90    
KIAA15 VPNASHFFSWNNYTFSDWQNFVGRRRYGAESQNPTVKALLI-VAYSFIIVFSLFGNVLVC
                                     :::  .   .: : : .... ... : .  
KIAA00        EASAFRSYKMINSTSTQPPDESCSQNLLITQQIIPVLYCMVFIAGILLNGVSG
                      10        20        30        40        50   

          100       110       120       130        140       150   
KIAA15 HVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVN-STWIFGKGMCHVSRFAQY
        ..:     .:   ... :...::....: . :: ..   . . : ..  .:.::    :
KIAA00 WIFFYVPSSKSFI-IYLKNIVIADFVMSL-TFPFKILGDSGLGPWQLNVFVCRVSAVLFY
            60         70        80         90       100       110 

           160       170       180         190       200       210 
KIAA15 CSLHVSALTLTAIAVDRHQVIMHPLKPRI--SITKGVIYIAVIWTMATFFSLPHAICQKL
        ...:: . .  :. ::.  :..::   .  :.. . .  ...: .  ....:. :    
KIAA00 VNMYVSIVFFGLISFDRYYKIVKPLWTSFIQSVSYSKLLSVIVWMLMLLLAVPNII----
             120       130       140       150       160           

             220       230       240       250       260       270 
KIAA15 FTFKYSEDIVRSLCLPDFPEPADLFWKYLDLATFILLYILPLLIISVAYARVAKKLWLCN
       .: .  .....  :. ..       :.  .   :. .. . .:.. : :. ..::..  .
KIAA00 LTNQSVREVTQIKCI-ELKSELGRKWHKASNYIFVAIFWIVFLLLIVFYTAITKKIFKSH
       170       180        190       200       210       220      

             280       290       300       310        320          
KIAA15 MIGDVTTEQYFALRRKKKKTIKMLMLVVVLFALCWFPLN-CYVLLLSSKV-----IRTNN
       . .. .. .       :::. . .. .: .: .:. : .   .   .:..      ....
KIAA00 LKSSRNSTSV------KKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSQTEAHYSCQSKE
        230             240       250       260       270       280

         330          340       350       360          370         
KIAA15 ALYFAFHW---FAMSSTCYNPFIYCWLNENFRIELKALLSMCQR---PPKPQEDRQPSPV
        : .  ..   .. ...: .:.:: .: . :: :.     .:..   : : :.:      
KIAA00 ILRYMKEFTLLLSAANVCLDPIIYFFLCQPFR-EI-----LCKKLHIPLKAQNDLDISRI
              290       300       310             320       330    

     380       390       400       410       420    
KIAA15 PSFRVAWTEKNDGQRAPLANNLLPTSQLQSGKTDLSSVEPIVTMS
                                                    
KIAA00 KRGNTTLESTDTL                                
          340                                       




424 residues in 1 query   sequences
1987081 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:19 2008 done: Thu Dec 18 15:07:19 2008
 Total Scan time:  0.400 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]