hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05415502/chunk_1/iprscan-20080502-05415502.nocrc
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Query sequence: KIAA1538
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 107.0    2.2e-27   6
SM00225                                                  73.7    2.3e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      46   203 ..     1   114 []    73.7  2.3e-17
SM00355      1/6     250   270 ..     1    23 []    10.7       20
SM00355      2/6     325   347 ..     1    23 []    20.9     0.17
SM00355      3/6     353   375 ..     1    23 []    10.2       22
SM00355      4/6     381   404 ..     1    23 []    23.8    0.025
SM00355      5/6     742   764 ..     1    23 []    20.7     0.21
SM00355      6/6     781   803 ..     1    23 []    20.8      0.2

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 46 to 203: score 73.7, E = 2.3e-17
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtl++g+         +kf+a  H++vLaa+   Sp+F++ ++++
    KIAA1538    46    CDVTLIAGD---------TKFPA--HRSVLAAS---SPFFREALLTs 78   

                   ..................................................
                    + + ++ +++  +++ +++  ++++++++++++++++ +++++++++++
    KIAA1538    79 aplplppatggaapnpatttaassssssssssssssssassssssssssp 128  

                   .............ieldDeallievspeaFralLnflYt.kldlpeed..
                   ++ +++ +++++  el++      v + aF  +Lnf+Y+ +l lp  +++
    KIAA1538   129 ppasppasspprvLELPG------VPAAAFSDVLNFIYSaRLALPGGGgd 172  

                   venveelLelAdfldSYGqip.lvelCeefllknl<-*
                      v e+ +l ++l    +i +l+ l e          
    KIAA1538   173 GAAVAEIGALGRRL----GISrLQGLGEGGDAWVP    203  

SM00355: domain 1 of 6, from 250 to 270: score 10.7, E = 20
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cgksf +++ L+ H       
    KIAA1538   250    LPCPQ-CGKSFIHPkRLQTHEA--    270  

SM00355: domain 2 of 6, from 325 to 347: score 20.9, E = 0.17
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   C +s+ + ++LkrH  vH   
    KIAA1538   325    YVCAA-CERSYVTLsSLKRHSNVH    347  

SM00355: domain 3 of 6, from 353 to 375: score 10.2, E = 22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + C k+f  ++  ++H   H   
    KIAA1538   353    YPCRY-CEKVFALAeYRTKHEVWH    375  

SM00355: domain 4 of 6, from 381 to 404: score 23.8, E = 0.025
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C ++f ++ +Lk H+r  H   
    KIAA1538   381    YQCIF-CWETFVTYyNLKTHQRaFH    404  

SM00355: domain 5 of 6, from 742 to 764: score 20.7, E = 0.21
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C   C ++f++ + L++H+  H   
    KIAA1538   742    HRCGD-CAQTFTTLrKLRKHQEAH    764  

SM00355: domain 6 of 6, from 781 to 803: score 20.8, E = 0.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C k+++++ aL rH ++H   
    KIAA1538   781    FTCPH-CAKVCKTAaALSRHGQRH    803  

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