hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05415502/chunk_1/iprscan-20080502-05415502.nocrc
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Query sequence: KIAA1538
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         133.5    5.5e-37   6
PF00096.16.fs Zinc finger, C2H2 type                         121.7      2e-33   6
PF00651.21.fs BTB/POZ domain                                  65.6    8.3e-18   2
PF00651.21.ls BTB/POZ domain                                  57.9    3.1e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/2      36    76 ..     1    49 [.    58.8  6.3e-16
PF00651.21.ls   1/1      36   194 ..     1   135 []    57.9  3.1e-14
PF00096.16.ls   1/6     250   272 ..     1    24 []    23.1  0.00094
PF00096.16.fs   2/6     325   347 ..     1    24 []    22.9  0.00019
PF00096.16.ls   2/6     325   347 ..     1    24 []    24.8  0.00028
PF00096.16.ls   4/6     381   404 ..     1    24 []    21.6   0.0026
PF00096.16.ls   5/6     742   764 ..     1    24 []    23.8  0.00056
PF00096.16.ls   6/6     781   803 ..     1    24 []    23.4  0.00076

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 2, from 36 to 76: score 58.8, E = 6.3e-16
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lne+r++g +cDVtL +gd         kf+AH+ vLaa+Sp+F++ 
    KIAA1538    36    LNEQRLRGLFCDVTLIAGD--------TKFPAHRSVLAASSPFFREA 74   

                   Ft<-*
                   ++   
    KIAA1538    75 LL    76   

PF00651.21.ls: domain 1 of 1, from 36 to 194: score 57.9, E = 3.1e-14
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lne+r++g +cDVtL +gd         kf+AH+ vLaa+Sp+F++ 
    KIAA1538    36    LNEQRLRGLFCDVTLIAGD--------TKFPAHRSVLAASSPFFREA 74   

                   Ftgqfkes..........................................
                   ++      + + ++ +++  +++ +++  ++++++++++++++++ ++++
    KIAA1538    75 LLTS---Aplplppatggaapnpatttaassssssssssssssssassss 121  

                   ............iteeessvsseieledvspedfealLefiYtgelsitq
                   +++++++++ ++ + +      ++el++v++ +f  +L+fiY+++l ++ 
    KIAA1538   122 sssssspppaspPASSPPR---VLELPGVPAAAFSDVLNFIYSARLALP- 167  

                   dqksPssc.kseenvedlLaaAadllqipslvdaCeefliksl<-*
                           +++ + v+++ a++ ++l i +         ++ l   
    KIAA1538   168 ------GGgGDGAAVAEIGALG-RRLGISR---------LQGL    194  

PF00096.16.ls: domain 1 of 6, from 250 to 272: score 23.1, E = 0.00094
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        Cp +CgksF +++ L++H   +   
    KIAA1538   250    LPCP-QCGKSFIHPKRLQTHEAQC    272  

PF00096.16.fs: domain 2 of 6, from 325 to 347: score 22.9, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C +s+ + s+LkrH ++H   
    KIAA1538   325    YVCA-ACERSYVTLSSLKRHSNVH    347  

PF00096.16.ls: domain 2 of 6, from 325 to 347: score 24.8, E = 0.00028
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C +s+ + s+LkrH ++H   
    KIAA1538   325    YVCA-ACERSYVTLSSLKRHSNVH    347  

PF00096.16.ls: domain 4 of 6, from 381 to 404: score 21.6, E = 0.0026
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C   C ++F + +nLk+H+r  H   
    KIAA1538   381    YQCI-FCWETFVTYYNLKTHQRAfH    404  

PF00096.16.ls: domain 5 of 6, from 742 to 764: score 23.8, E = 0.00056
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  dC ++F++   L++H+  H   
    KIAA1538   742    HRCG-DCAQTFTTLRKLRKHQEAH    764  

PF00096.16.ls: domain 6 of 6, from 781 to 803: score 23.4, E = 0.00076
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C k++++ + L rH ++H   
    KIAA1538   781    FTCP-HCAKVCKTAAALSRHGQRH    803  

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