hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05401817/chunk_1/iprscan-20080502-05401817.nocrc
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Query sequence: KIAA1537
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     118.9    7.2e-34   1
PF02759.9.ls RUN domain                                     120.7    3.9e-33   1
PF01363.12.ls FYVE zinc finger                               103.8    4.6e-28   1
PF01363.12.fs FYVE zinc finger                               102.0    1.6e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1      58   182 ..     1   174 []   118.9  7.2e-34
PF02759.9.ls   1/1      58   182 ..     1   174 []   120.7  3.9e-33
PF01363.12.fs   1/1     548   612 ..     1    77 []   102.0  1.6e-27
PF01363.12.ls   1/1     548   612 ..     1    77 []   103.8  4.6e-28

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 58 to 182: score 118.9, E = 7.2e-34
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                      ++k++ls+ +
    KIAA1537    58    QFFVVMEHCLKHGLK----------------------VRKSFLSYNK 82   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +  +              ++p+++v ++ ++ ++i  ++++L+      +
    KIAA1537    83 T--I--------------WGPLELVEKLYPEAEEIGASVRDLPG-----L 111  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt++gr R  AW+RlaL++k++  yl+ L+   +ll+++Y+  Al+++  
    KIAA1537   112 KTPLGRAR--AWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMME-- 157  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg   + +lL+gL+++d +L++k+e   
    KIAA1537   158 -EEG-AVIVGLLVGLNVIDANLCVKGE    182  

PF02759.9.ls: domain 1 of 1, from 58 to 182: score 120.7, E = 3.9e-33
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                      ++k++ls+ +
    KIAA1537    58    QFFVVMEHCLKHGLK----------------------VRKSFLSYNK 82   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +  +              ++p+++v ++ ++ ++i  ++++L+      +
    KIAA1537    83 T--I--------------WGPLELVEKLYPEAEEIGASVRDLPG-----L 111  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt++gr R  AW+RlaL++k++  yl+ L+   +ll+++Y+  Al+++  
    KIAA1537   112 KTPLGRAR--AWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMME-- 157  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg   + +lL+gL+++d +L++k+e   
    KIAA1537   158 -EEG-AVIVGLLVGLNVIDANLCVKGE    182  

PF01363.12.fs: domain 1 of 1, from 548 to 612: score 102.0, E = 1.6e-27
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                       +W++D+e+++C  C+k+F+ l kR+HHCR+CG ifC+ Cs+++++l
    KIAA1537   548    LVWLKDKEATHCKLCEKEFS-LSKRKHHCRNCGEIFCNACSDNELPL 593  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p+             kpvRVCdsC+++l +   
    KIAA1537   594 PSS-----------PKPVRVCDSCHALLIQ    612  

PF01363.12.ls: domain 1 of 1, from 548 to 612: score 103.8, E = 4.6e-28
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                       +W++D+e+++C  C+k+F+ l kR+HHCR+CG ifC+ Cs+++++l
    KIAA1537   548    LVWLKDKEATHCKLCEKEFS-LSKRKHHCRNCGEIFCNACSDNELPL 593  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p+             kpvRVCdsC+++l +   
    KIAA1537   594 PSS-----------PKPVRVCDSCHALLIQ    612  

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