hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04534597/chunk_1/iprscan-20080502-04534597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1508 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 374.3 7.3e-108 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/13 213 235 .. 1 23 [] 29.4 0.00049 SM00355 2/13 241 263 .. 1 23 [] 29.4 0.00051 SM00355 3/13 269 291 .. 1 23 [] 29.1 0.0006 SM00355 4/13 297 319 .. 1 23 [] 26.6 0.0035 SM00355 5/13 325 347 .. 1 23 [] 30.3 0.00027 SM00355 6/13 353 375 .. 1 23 [] 21.1 0.16 SM00355 7/13 381 403 .. 1 23 [] 31.3 0.00013 SM00355 8/13 409 431 .. 1 23 [] 29.6 0.00043 SM00355 9/13 437 459 .. 1 23 [] 26.9 0.0027 SM00355 10/13 465 487 .. 1 23 [] 30.6 0.00021 SM00355 11/13 493 515 .. 1 23 [] 29.3 0.00053 SM00355 12/13 521 543 .. 1 23 [] 29.1 0.0006 SM00355 13/13 549 571 .. 1 23 [] 31.6 0.00011 Alignments of top-scoring domains: SM00355: domain 1 of 13, from 213 to 235: score 29.4, E = 0.00049 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksfs+ + + rH + H KIAA1508 213 YKCSE-CGKSFSQSsGFLRHRKAH 235 SM00355: domain 2 of 13, from 241 to 263: score 29.4, E = 0.00051 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgksfs+k++L++H+rvH KIAA1508 241 HECSE-CGKSFSRKtHLTQHQRVH 263 SM00355: domain 3 of 13, from 269 to 291: score 29.1, E = 0.0006 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksf++ + L++H+rvH KIAA1508 269 YDCSE-CGKSFRQVsVLIQHQRVH 291 SM00355: domain 4 of 13, from 297 to 319: score 26.6, E = 0.0035 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ ++L rH H KIAA1508 297 YECSE-CGKSFSHStNLYRHRSAH 319 SM00355: domain 5 of 13, from 325 to 347: score 30.3, E = 0.00027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ ++L rH rvH KIAA1508 325 YECSE-CGKSFSHStNLFRHWRVH 347 SM00355: domain 6 of 13, from 353 to 375: score 21.1, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs L++H+r H KIAA1508 353 YECSE-CGKAFSCNiYLIHHQRFH 375 SM00355: domain 7 of 13, from 381 to 403: score 31.3, E = 0.00013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf +k+ L++H+rvH KIAA1508 381 YVCSE-CGKSFGQKsVLIQHQRVH 403 SM00355: domain 8 of 13, from 409 to 431: score 29.6, E = 0.00043 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+fs+ + L rH r H KIAA1508 409 YECSE-CGKVFSQSsGLFRHRRAH 431 SM00355: domain 9 of 13, from 437 to 459: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C ksfs k++L+rH+ vH KIAA1508 437 YECSE-CEKSFSCKtDLIRHQTVH 459 SM00355: domain 10 of 13, from 465 to 487: score 30.6, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksf +k++L+rH+ vH KIAA1508 465 YECSV-CGKSFIRKtHLIRHQTVH 487 SM00355: domain 11 of 13, from 493 to 515: score 29.3, E = 0.00053 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgks+s+ +aL +H rvH KIAA1508 493 YECDE-CGKSYSQSsALLQHRRVH 515 SM00355: domain 12 of 13, from 521 to 543: score 29.1, E = 0.0006 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgksf++k++L++H vH KIAA1508 521 YECRE-CGKSFTRKnHLIQHKTVH 543 SM00355: domain 13 of 13, from 549 to 571: score 31.6, E = 0.00011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ + L rH rvH KIAA1508 549 YECSE-CGKSFSQSsGLLRHRRVH 571 //