hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04534597/chunk_1/iprscan-20080502-04534597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1508 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 432.3 6.1e-127 13 PF00096.16.fs Zinc finger, C2H2 type 406.7 3.1e-119 13 PF01096.9.fs Transcription factor S-II (TFIIS) 58.7 1.8e-17 13 PF01286.9.fs XPA protein N-terminal 52.5 3.3e-14 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/13 213 235 .. 1 24 [] 32.5 7.6e-07 PF00096.16.ls 1/13 213 235 .. 1 24 [] 34.4 3.5e-07 PF00096.16.ls 2/13 241 263 .. 1 24 [] 34.9 2.5e-07 PF00096.16.fs 2/13 241 263 .. 1 24 [] 33.0 5.7e-07 PF00096.16.ls 3/13 269 291 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 3/13 269 291 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 4/13 297 319 .. 1 24 [] 33.6 6.2e-07 PF00096.16.fs 4/13 297 319 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 5/13 325 347 .. 1 24 [] 38.2 2.7e-08 PF00096.16.fs 5/13 325 347 .. 1 24 [] 36.2 9.1e-08 PF00096.16.ls 6/13 353 375 .. 1 24 [] 23.4 0.00076 PF00096.16.ls 7/13 381 403 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 7/13 381 403 .. 1 24 [] 32.9 6e-07 PF00096.16.ls 8/13 409 431 .. 1 24 [] 36.7 7.7e-08 PF00096.16.fs 8/13 409 431 .. 1 24 [] 34.7 2.2e-07 PF00096.16.ls 9/13 437 459 .. 1 24 [] 25.2 0.00021 PF00096.16.fs 9/13 437 459 .. 1 24 [] 23.3 0.00015 PF00096.16.ls 10/13 465 487 .. 1 24 [] 34.9 2.5e-07 PF00096.16.fs 10/13 465 487 .. 1 24 [] 33.0 5.8e-07 PF00096.16.fs 11/13 493 515 .. 1 24 [] 33.3 4.8e-07 PF00096.16.ls 11/13 493 515 .. 1 24 [] 35.2 2e-07 PF00096.16.fs 12/13 521 543 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 12/13 521 543 .. 1 24 [] 31.2 3.4e-06 PF00096.16.ls 13/13 549 571 .. 1 24 [] 38.1 2.8e-08 PF00096.16.fs 13/13 549 571 .. 1 24 [] 36.1 9.4e-08 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 13, from 213 to 235: score 32.5, E = 7.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs++s + rH++ H KIAA1508 213 YKCS-ECGKSFSQSSGFLRHRKAH 235 PF00096.16.ls: domain 1 of 13, from 213 to 235: score 34.4, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksFs++s + rH++ H KIAA1508 213 YKCS-ECGKSFSQSSGFLRHRKAH 235 PF00096.16.ls: domain 2 of 13, from 241 to 263: score 34.9, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFsrk +L++H+r+H KIAA1508 241 HECS-ECGKSFSRKTHLTQHQRVH 263 PF00096.16.fs: domain 2 of 13, from 241 to 263: score 33.0, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFsrk +L++H+r+H KIAA1508 241 HECS-ECGKSFSRKTHLTQHQRVH 263 PF00096.16.ls: domain 3 of 13, from 269 to 291: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF++ s L +H+r+H KIAA1508 269 YDCS-ECGKSFRQVSVLIQHQRVH 291 PF00096.16.fs: domain 3 of 13, from 269 to 291: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksF++ s L +H+r+H KIAA1508 269 YDCS-ECGKSFRQVSVLIQHQRVH 291 PF00096.16.ls: domain 4 of 13, from 297 to 319: score 33.6, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ nL rH+ H KIAA1508 297 YECS-ECGKSFSHSTNLYRHRSAH 319 PF00096.16.fs: domain 4 of 13, from 297 to 319: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ nL rH+ H KIAA1508 297 YECS-ECGKSFSHSTNLYRHRSAH 319 PF00096.16.ls: domain 5 of 13, from 325 to 347: score 38.2, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ nL rH+r+H KIAA1508 325 YECS-ECGKSFSHSTNLFRHWRVH 347 PF00096.16.fs: domain 5 of 13, from 325 to 347: score 36.2, E = 9.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ nL rH+r+H KIAA1508 325 YECS-ECGKSFSHSTNLFRHWRVH 347 PF00096.16.ls: domain 6 of 13, from 353 to 375: score 23.4, E = 0.00076 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + L +H+r H KIAA1508 353 YECS-ECGKAFSCNIYLIHHQRFH 375 PF00096.16.ls: domain 7 of 13, from 381 to 403: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF +ks L +H+r+H KIAA1508 381 YVCS-ECGKSFGQKSVLIQHQRVH 403 PF00096.16.fs: domain 7 of 13, from 381 to 403: score 32.9, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF +ks L +H+r+H KIAA1508 381 YVCS-ECGKSFGQKSVLIQHQRVH 403 PF00096.16.ls: domain 8 of 13, from 409 to 431: score 36.7, E = 7.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L rH+r H KIAA1508 409 YECS-ECGKVFSQSSGLFRHRRAH 431 PF00096.16.fs: domain 8 of 13, from 409 to 431: score 34.7, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s L rH+r H KIAA1508 409 YECS-ECGKVFSQSSGLFRHRRAH 431 PF00096.16.ls: domain 9 of 13, from 437 to 459: score 25.2, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksFs k +L rH+ +H KIAA1508 437 YECS-ECEKSFSCKTDLIRHQTVH 459 PF00096.16.fs: domain 9 of 13, from 437 to 459: score 23.3, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksFs k +L rH+ +H KIAA1508 437 YECS-ECEKSFSCKTDLIRHQTVH 459 PF00096.16.ls: domain 10 of 13, from 465 to 487: score 34.9, E = 2.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF rk +L rH+ +H KIAA1508 465 YECS-VCGKSFIRKTHLIRHQTVH 487 PF00096.16.fs: domain 10 of 13, from 465 to 487: score 33.0, E = 5.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF rk +L rH+ +H KIAA1508 465 YECS-VCGKSFIRKTHLIRHQTVH 487 PF00096.16.fs: domain 11 of 13, from 493 to 515: score 33.3, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgks+s++s L +H+r+H KIAA1508 493 YECD-ECGKSYSQSSALLQHRRVH 515 PF00096.16.ls: domain 11 of 13, from 493 to 515: score 35.2, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgks+s++s L +H+r+H KIAA1508 493 YECD-ECGKSYSQSSALLQHRRVH 515 PF00096.16.fs: domain 12 of 13, from 521 to 543: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+rk +L +H+ +H KIAA1508 521 YECR-ECGKSFTRKNHLIQHKTVH 543 PF00096.16.ls: domain 12 of 13, from 521 to 543: score 31.2, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksF+rk +L +H+ +H KIAA1508 521 YECR-ECGKSFTRKNHLIQHKTVH 543 PF00096.16.ls: domain 13 of 13, from 549 to 571: score 38.1, E = 2.8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s L rH+r+H KIAA1508 549 YECS-ECGKSFSQSSGLLRHRRVH 571 PF00096.16.fs: domain 13 of 13, from 549 to 571: score 36.1, E = 9.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++s L rH+r+H KIAA1508 549 YECS-ECGKSFSQSSGLLRHRRVH 571 //