hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04391567/chunk_1/iprscan-20080502-04391567.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1501 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00324 232.6 3.4e-65 1 SM00233 53.5 2.8e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 280 401 .. 1 82 [] 53.5 2.8e-11 SM00324 1/1 508 685 .. 1 193 [] 232.6 3.4e-65 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 280 to 401: score 53.5, E = 2.8e-11 *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk.. + +eGwL+ k ++++++ ++++++wk++y+ L+ ++L++ k++++ KIAA1501 280 IRREGWLYYKQiltkkgkkagsgLrQWKRVYAALRARSLSLSKERre 326 ...............kpkgsipLsgcsvre.p.......cFeivt.dr.t +++ + + +++ ++ + +c v+ + ++ +++++F+++t d + KIAA1501 327 pgpaaagaaaagageDEAAPVCIGSCLVDIsYsetkrrhVFRLTTaDFcE 376 lllqAeseeereeWvealqsaiaka<-* +l+qAe+ +++ W++a+++ ++ KIAA1501 377 YLFQAEDRDDMLGWIRAIRENSRAE 401 SM00324: domain 1 of 1, from 508 to 685: score 232.6, E = 3.4e-65 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. +++P+iv+ C++ +e+rGl+ GIYRv+G++ +v L+e++++g+ + KIAA1501 508 QRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGd 554 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + d++++d +++++lLK+++R+LPePL+t++ y +fie KIAA1501 555 INLQ----------DERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE 594 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a ++ ed er r lr+l++ LP ++++tL++L +HL KIAA1501 595 ANRI--------------EDARERMRTLRKLIRDLPGHYYETLKFLVgHL 630 nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl + +a+hse+NkM +rNLA+vFgPtL r ++++ ++ +t++ k+vetl KIAA1501 631 KTIADHSEKNKMEPRNLALVFGPTLVRTSednmtdmVTHMPDRYKIVETL 680 ienad<-* i+++d KIAA1501 681 IQHSD 685 //