hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04391567/chunk_1/iprscan-20080502-04391567.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1501 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 244.0 1.1e-71 1 PF00620.17.ls RhoGAP domain 245.9 7.8e-71 1 PF00169.19.fs PH domain 48.0 3.8e-14 1 PF00169.19.ls PH domain 50.0 7.3e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 280 399 .. 1 92 [] 48.0 3.8e-14 PF00169.19.ls 1/1 280 399 .. 1 92 [] 50.0 7.3e-12 PF00620.17.fs 1/1 511 664 .. 1 155 [] 244.0 1.1e-71 PF00620.17.ls 1/1 511 664 .. 1 155 [] 245.9 7.8e-71 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 280 to 399: score 48.0, E = 3.8e-14 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + +eGwL+ k ++++++ ++g+++wk++y+ L+ ++L++ k++ + KIAA1501 280 IRREGWLYYKQiltkkgkkagsGLRQWKRVYAALRARSLSLSKERRe 326 ..............kkpkgsipLsgiqvtkvpdn.krkncFeirt.dret +++ + + +++ + + ++ v++ + +kr+++F+++t d + KIAA1501 327 pgpaaagaaaagagEDEAAPVCIGSCLVDISYSEtKRRHVFRLTTaDFCE 376 lllqaeseeerkeWvkaiqsair<-* +l+qae+ +++ W++ai++ +r KIAA1501 377 YLFQAEDRDDMLGWIRAIRENSR 399 PF00169.19.ls: domain 1 of 1, from 280 to 399: score 50.0, E = 7.3e-12 *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk. + +eGwL+ k ++++++ ++g+++wk++y+ L+ ++L++ k++ + KIAA1501 280 IRREGWLYYKQiltkkgkkagsGLRQWKRVYAALRARSLSLSKERRe 326 ..............kkpkgsipLsgiqvtkvpdn.krkncFeirt.dret +++ + + +++ + + ++ v++ + +kr+++F+++t d + KIAA1501 327 pgpaaagaaaagagEDEAAPVCIGSCLVDISYSEtKRRHVFRLTTaDFCE 376 lllqaeseeerkeWvkaiqsair<-* +l+qae+ +++ W++ai++ +r KIAA1501 377 YLFQAEDRDDMLGWIRAIRENSR 399 PF00620.17.fs: domain 1 of 1, from 511 to 664: score 244.0, E = 1.1e-71 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. Pliv C++ +e+rGL++ GIyRv+G+ +++ L+e+++rg+ + KIAA1501 511 PLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINl 557 ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle +d++++d +v++slLK F+R+LPePL+t++ y++fie a ++ed++er++ KIAA1501 558 QDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE-ANRIEDARERMR 606 alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl lr+l+r LP + ++tL++L++hL+ +a++se+NkM ++NLA+vFgPtL+ KIAA1501 607 TLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLV 656 rppdgdsad<-* r++++ +++ KIAA1501 657 RTSED-NMT 664 PF00620.17.ls: domain 1 of 1, from 511 to 664: score 245.9, E = 7.8e-71 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. Pliv C++ +e+rGL++ GIyRv+G+ +++ L+e+++rg+ + KIAA1501 511 PLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINl 557 ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle +d++++d +v++slLK F+R+LPePL+t++ y++fie a ++ed++er++ KIAA1501 558 QDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE-ANRIEDARERMR 606 alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl lr+l+r LP + ++tL++L++hL+ +a++se+NkM ++NLA+vFgPtL+ KIAA1501 607 TLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLV 656 rppdgdsad<-* r++++ +++ KIAA1501 657 RTSED-NMT 664 //