# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj07162.fasta.huge -Q ../query/KIAA1486.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1486, 677 aa vs ./tmplib.24314 library 1986828 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.3706+/-0.00741; mu= -12.5575+/- 0.494 mean_var=506.5584+/-122.730, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.056985 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0865 ( 1900 res) hk06640y1 (1900) 1013 98.4 6.3e-21 >>KIAA0865 ( 1900 res) hk06640y1 (1900 aa) initn: 812 init1: 450 opt: 1013 Z-score: 467.5 bits: 98.4 E(): 6.3e-21 Smith-Waterman score: 1271; 43.390% identity (61.525% similar) in 590 aa overlap (36-595:1219-1777) 10 20 30 40 50 60 KIAA14 FLLHLALPGDLNFGSVPLYMISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASD : ...::: ::::.:.::.:::::::: KIAA08 LQRKIITCQKVIRGFLARQHLLQRISIRQQEVTSINSFLQNTEDMGLKTYDALVIQNASD 1190 1200 1210 1220 1230 1240 70 80 90 100 110 120 KIAA14 IARENDRLRNETNLAYLKEKNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPA :::::::::.: : : ::: : : :::. :: . : .::. . :.. : KIAA08 IARENDRLRSEMNAPYHKEKLEVRNMQEEGSKRTDDKSG--------PRHFHPSSMSVCA 1250 1260 1270 1280 1290 1300 130 140 150 160 170 180 KIAA14 PQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGS-RRQPPPKPKRDPSTKLSTSSETVSS : : . : : :. : ::::: . ::.:: : :.::::::::::.:.::.: :.:: KIAA08 AVDGLGQ-CLVGPSIWSPSLHSVFSMDDSSSLPSPRKQPPPKPKRDPNTRLSASYEAVS- 1310 1320 1330 1340 1350 190 200 210 220 230 240 KIAA14 TAASKSGKTPERTEASAKPRPHSDEYS--KKIPPPKPKRNPNTQLSTSFDETYIKKHGPR : :. .:: :.::::::.:: ::::: ::::.:::.:: :..: .. : KIAA08 --ACLSAAREAANEALARPRPHSDDYSTMKKIPPRKPKRSPNTKLSGSYEEISGSRPGDA 1360 1370 1380 1390 1400 1410 250 260 270 280 290 KIAA14 RTSLPRDSSLSQM-----------GSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEAV : . .. . ..: :: .. :::::::.:. : .. : .:.: KIAA08 RPAGAPGAAARVLTPGTPQCALPPAAPPGDEDDSEPVYIEMLGHAA---RPDSPDPGESV 1420 1430 1440 1450 1460 1470 300 310 320 330 340 350 KIAA14 YEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFP ::::: . :: : : .: :. :.: : : : . : : :::::::: KIAA08 YEEMKCCLPDDGGPGAG-SFLLHG-----ASP--PLLHRAPEDEAAGPPGDACDIPPPFP 1480 1490 1500 1510 1520 360 370 380 390 400 410 KIAA14 NLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLE-NVSYMKQPAGASPSTLPSH ::: ::::::::::.:: ::: ::::::::::: :::::: :..: :: :.:: . :.. KIAA08 NLLPHRPPLLVFPPTPVTCSPASDESPLTPLEVKKLPVLETNLKYPVQPEGSSPLS-PQY 1530 1540 1550 1560 1570 1580 420 430 440 450 460 KIAA14 VP---GHAKLEKEQAAAL--GPASATPALSSSPPPPSTLYRTQSPHGYPKSH---STSPS : . . :: : . :.: :. :::: .:. : .: :. KIAA08 SKSQKGDGDRPASPGLALFNGSGRASPP-STPPPPPPPPGPPPAPY-RPCAHLAFPPEPA 1590 1600 1610 1620 1630 1640 470 480 490 500 510 520 KIAA14 PVSMGRSLTPLSLKR--PPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYG ::. :.. . : : .: .: : : :..:.: ::. : .:. .. KIAA08 PVNAGKAGPSAEAPKVHPKPNSAPVAGPCS-SFPKIPYS---PVKATRADARKAGSSASP 1650 1660 1670 1680 1690 530 540 550 560 570 KIAA14 AAPGGSRSRTP-TSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSH----S :: . : : .:::.::.:::.::::.::::..::. .: :: .... :. . KIAA08 PAPYSPPSSRPLSSPLDELASLFNSGRSVLRKSAAGRKIRE-AEGFETNMNISSRDDPST 1700 1710 1720 1730 1740 1750 580 590 600 610 620 630 KIAA14 TEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSPTLLAGNHSSEP .: . .... ..:: . : KIAA08 SEITSETQDRNANNHGIQLSNSLSSAITAENGNSISNGLPEEDGYSRLSISGTGTSTFQR 1760 1770 1780 1790 1800 1810 677 residues in 1 query sequences 1986828 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:24:23 2008 done: Thu Dec 18 15:24:24 2008 Total Scan time: 0.550 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]