hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03593926/chunk_1/iprscan-20080502-03593926.nocrc
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Query sequence: KIAA1478
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00324                                                 186.0    3.7e-51   1
SM00109                                                  33.7    2.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/1     225   273 ..     1    61 []    33.7  2.4e-05
SM00324    1/1     298   474 ..     1   193 []   186.0  3.7e-51

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 225 to 273: score 33.7, E = 2.4e-05
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+fv +t+ kp  C  C+k+i+++        +l+C++C+v+ H  C
    KIAA1478   225    HDFVSKTViKPESCVPCGKRIKFGKL------SLKCRDCRVVSHPEC 265  

                   aekvpaqshksglsC<-*
                    ++ p+       +C   
    KIAA1478   266 RDRCPL-------PC    273  

SM00324: domain 1 of 1, from 298 to 474: score 186.0, E = 3.7e-51
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      ++iP+iv++C++++e+rGl++ G+YR+sG   +vkeL+e+f + +  
    KIAA1478   298    PMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTv 344  

                   dldsldesiteesedleey.dvhdvAglLKlyLReLPePLltfelyeefi
                                 +l++ +d+h++++lLK +LR+L ePLltf+l + f+
    KIAA1478   345 P-------------LLSKVdDIHAICSLLKDFLRNLKEPLLTFRLNRAFM 381  

                   eaaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.H
                   eaa++               de+  + a+++++ +LP+anr+tL +L+ H
    KIAA1478   382 EAAEI--------------TDEDNSIAAMYQAVGELPQANRDTLAFLMiH 417  

                   LnrVaehsevNkMtarNLAivFgPtLlrpp.........ltdikhqnkvv
                   L+rVa +s+++kM++ NLA+vFgPt+  +  +++++ + l+dik q kvv
    KIAA1478   418 LQRVA-QSPHTKMDVANLAKVFGPTIVAHAvpnpdpvtmLQDIKRQPKVV 466  

                   etlienad<-*
                   e l+  ++   
    KIAA1478   467 ERLLSLPL    474  

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