hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03392419/chunk_1/iprscan-20080502-03392419.nocrc
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Query sequence: KIAA1466
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00665.16.ls Integrase core domain                           97.1    4.8e-26   1
PF00665.16.fs Integrase core domain                           95.2    5.7e-26   1
PF00075.14.fs RNase H                                         86.3    2.3e-25   1
PF00075.14.ls RNase H                                         53.2    7.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00075.14.ls   1/1      26   148 ..     1   164 []    53.2  7.9e-13
PF00075.14.fs   1/1      53   148 ..    52   164 .]    86.3  2.3e-25
PF00665.16.fs   1/1     272   425 ..     1   173 []    95.2  5.7e-26
PF00665.16.ls   1/1     272   425 ..     1   173 []    97.1  4.8e-26

Alignments of top-scoring domains:
PF00075.14.ls: domain 1 of 1, from 26 to 148: score 53.2, E = 7.9e-13
                   *->peavtvYTDGSsngnpgtGgAGyGvlrdrggkekqrskplpggtTnQ
                      ++++        +g ++    G G   +++      + ++       
    KIAA1466    26    EPGM--------QGDSKFSSQGTGPP-YQD-L--STKSRI------- 53   

                   rAEllAlieALelalKsgiqkvnIyTDSqYvf.taH.iggitewlhgWkk
                        Al  AL +a  +g ++vnIyTDS+Y+f t+H +g+i++       
    KIAA1466    54 -----ALNRALLVA--KG-RTVNIYTDSKYAFaTLHaHGAIYK------- 88   

                   ngwptlkGseskpiknkeiwellkallkrkekPvyiqwVpGHqkGiPgpl
                     +++l+ + +k+ik  ei++ll+a+   + k v++++++GH +   g  
    KIAA1466    89 -ERGLLT-AGGKEIKE-EILQLLEAVWA-PDK-VAVIHCKGH-QTRGGIE 132  

                   aeqpqGNelADkLAkqgas<-*
                   a   +GN  AD+ A+q+a+   
    KIAA1466   133 A---KGNRKADREARQAAM    148  

PF00075.14.fs: domain 1 of 1, from 53 to 148: score 86.3, E = 2.3e-25
                   *->lAlieALelalKsgiqkvnIyTDSqYvf.taH.iggitewlhgWkkn
                      +Al  AL +a  +g ++vnIyTDS+Y+f t+H +g+i++        
    KIAA1466    53    IALNRALLVA--KG-RTVNIYTDSKYAFaTLHaHGAIYK-------- 88   

                   gwptlkGseskpiknkeiwellkallkrkekPvyiqwVpGHqkGiPgpla
                    +++l+ + +k+ik  ei++ll+a+   + k v++++++GH +   g  a
    KIAA1466    89 ERGLLT-AGGKEIKE-EILQLLEAVWA-PDK-VAVIHCKGH-QTRGGIEA 133  

                   eqpqGNelADkLAkqgas<-*
                      +GN  AD+ A+q+a+   
    KIAA1466   134 ---KGNRKADREARQAAM    148  

PF00665.16.fs: domain 1 of 1, from 272 to 425: score 95.2, E = 5.7e-26
                   *->r.srpnelwqmDitGpipvktkggkkyllvivDdfSrfivayplksk
                      ++  p e + +D+t ++p  ++g ++y lv+v++fS++++a+p++ +
    KIAA1466   272    TgATPCENLLVDFT-ELP-RARG-YQYMLVFVCTFSGWVEAFPTRIE 315  

                   sdaetvlallkaalerrggkkgrpvdkpkiihsDnGseftskarepvnta
                     a+ v++ll++ ++ r+g+       p+++ sDnG++f+++        
    KIAA1466   316 -KAQEVTRLLLKDIIPRFGL-------PLTLGSDNGPAFMAE-------V 350  

                   fqeflkelGIkhsfsrpynPqdNGvvERfnrtLkeelrkllsfsleewee
                   +q++ + l+Ik++++++y+Pq+ G+v  +n+tLk+ l+  ++  +  w++
    KIAA1466   351 VQQLSQLLKIKWKLHIVYHPQSSGKVQWMNQTLKHLLKFCQEP-HLRWDQ 399  

                   al.talylyNrrrrhsllggltPaerlt<-*
                   +l++a      +  +  l gl+P e+++   
    KIAA1466   400 VLpMAFLQVRCTLTK--LTGLSPCEIVF    425  

PF00665.16.ls: domain 1 of 1, from 272 to 425: score 97.1, E = 4.8e-26
                   *->r.srpnelwqmDitGpipvktkggkkyllvivDdfSrfivayplksk
                      ++  p e + +D+t ++p  ++g ++y lv+v++fS++++a+p++ +
    KIAA1466   272    TgATPCENLLVDFT-ELP-RARG-YQYMLVFVCTFSGWVEAFPTRIE 315  

                   sdaetvlallkaalerrggkkgrpvdkpkiihsDnGseftskarepvnta
                     a+ v++ll++ ++ r+g+       p+++ sDnG++f+++        
    KIAA1466   316 -KAQEVTRLLLKDIIPRFGL-------PLTLGSDNGPAFMAE-------V 350  

                   fqeflkelGIkhsfsrpynPqdNGvvERfnrtLkeelrkllsfsleewee
                   +q++ + l+Ik++++++y+Pq+ G+v  +n+tLk+ l+  ++  +  w++
    KIAA1466   351 VQQLSQLLKIKWKLHIVYHPQSSGKVQWMNQTLKHLLKFCQEP-HLRWDQ 399  

                   al.talylyNrrrrhsllggltPaerlt<-*
                   +l++a      +  +  l gl+P e+++   
    KIAA1466   400 VLpMAFLQVRCTLTK--LTGLSPCEIVF    425  

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