# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj01441.fasta.huge -Q ../query/KIAA1466.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1466, 505 aa vs ./tmplib.24314 library 1987000 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.6243+/-0.00481; mu= 22.7215+/- 0.329 mean_var=79.9095+/-18.563, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.143475 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1305 ( 1819 res) fh04045s1 (1819) 184 48.4 5.1e-06 KIAA1925 ( 1147 res) fj02353(revised) (1147) 149 40.8 0.0006 >>KIAA1305 ( 1819 res) fh04045s1 (1819 aa) initn: 180 init1: 118 opt: 184 Z-score: 200.0 bits: 48.4 E(): 5.1e-06 Smith-Waterman score: 184; 25.000% identity (51.923% similar) in 208 aa overlap (230-426:1489-1684) 200 210 220 230 240 250 KIAA14 GRLAIPEAIAPQFMKQFHQGTHMGKTALETLVGWHFYVPCLTAITRAVCEQCLTCAQNN- :.:: : . .. :..:: : : KIAA13 TQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWW---PGMQEHVKDYCRSCLFCIPRNL 1460 1470 1480 1490 1500 1510 260 270 280 290 300 310 KIAA14 ---PWQVPTQPPGIQETGATPCENLLVDFTELP---RARGYQYMLVFVCTFSGWVEAFPT .: .: .. : .: :: .. . : .:....:. . . :::::: KIAA13 IGSELKVIESPWPLRST--APWSNLQIEVVG-PVTISEEGHKHVLIVADPNTRWVEAFPL 1520 1530 1540 1550 1560 1570 320 330 340 350 360 370 KIAA14 RIEKAQEVTRLLLKDIIPRFGLPLTLGSDNGPAFMAEVVQQLSQLL--KIKWKLHIVYHP . :...::. .. :.:.:. : . .:: : .:. . . : .. . . : KIAA13 KPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASLSRDLQFP 1580 1590 1600 1610 1620 1630 380 390 400 410 420 KIAA14 --QSSGKVQWMNQTLKHLLKFCQEPHLRWDQVLPMAFLQVRCTLTKLTGLSPCEIVFGRP ::: ....::... : . .: ::. : : . : : : ... : KIAA13 CLTSSGAYWEFKRALKEFI-FLHGK--KWAASLPLLHLAFRASSTDAT---PFKVLTGGE 1640 1650 1660 1670 1680 430 440 450 460 470 480 KIAA14 PPIINQVKGDLWELGELTLKRQMQALGLAMQKIHGWVREKLPISLTDPVHPFTPGDLVWV KIAA13 SRLTEPLWWEMSSANIEGLKMDVFLLQLVGELLELHWRVADKASEKAENRRFKRESQEKE 1690 1700 1710 1720 1730 1740 >>KIAA1925 ( 1147 res) fj02353(revised) (1147 aa) initn: 105 init1: 81 opt: 149 Z-score: 162.7 bits: 40.8 E(): 0.0006 Smith-Waterman score: 149; 23.832% identity (54.206% similar) in 214 aa overlap (221-425:142-345) 200 210 220 230 240 250 KIAA14 QGGRWKFSDGRLAIPEAIAPQFMKQFHQGTHMGKTALETLVGWHFYVPCLTAITRAVCEQ : :.: .: . . : . KIAA19 AVNGETDKIRYYLHSEDLFDILHNTHLSIGHGGRTRMEKELQAK-YKNITKEVIMLYLTL 120 130 140 150 160 170 260 270 280 290 300 KIAA14 CLTCAQ-NNPWQVPTQPPGIQETGATPCENLLVDFTELPRARGYQYMLVF--VCTFSGWV : : : :. . .:.:. .. :. :.:. : .. :...: . .:: .. KIAA19 CKPCQQKNSKLKKVLTSKSIKEV-SSRCQVDLIDMQLNPDGE-YRFILHYQDLCTKLTFL 180 190 200 210 220 310 320 330 340 350 360 KIAA14 EAFPTRIEKAQEVTRLLLKDIIPRFGLPLTLGSDNGPAFMAEVVQQLSQLLKIKW-KLHI ... .. . ::.. :: ::. .: : .: :::: : ..::..::.. : .:.: KIAA19 RSLKSK--RPTEVAHALL-DIFTIIGAPSVLQSDNGREFSSQVVSELSNI----WPELKI 230 240 250 260 270 280 370 380 390 400 410 420 KIAA14 VYHP----QSSGKVQWMNQTLKHLLKFCQEPHL-RWDQVLPMAFLQVRCTLTKLTGLSPC :. ::..... .. :..... : . .: . : . .. . .:: KIAA19 VHGKSQTCQSQSSAEQTEDIRKRIFSWMQTNNSSHWTEFLWFIQMSQNQPYHRSMQQTPC 290 300 310 320 330 340 430 440 450 460 470 480 KIAA14 EIVFGRPPPIINQVKGDLWELGELTLKRQMQALGLAMQKIHGWVREKLPISLTDPVHPFT : .: KIAA19 ESAFSSEAKLGLSHSQLTEELVASLHTENELDQADKELENTLRAQYEENIETGTDSSDIE 350 360 370 380 390 400 505 residues in 1 query sequences 1987000 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:37 2008 done: Thu Dec 18 15:23:38 2008 Total Scan time: 0.450 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]