# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh04686.fasta.huge -Q ../query/KIAA1447.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1447, 1721 aa vs ./tmplib.24314 library 1985784 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.8177+/-0.0115; mu= -16.4843+/- 0.775 mean_var=584.7656+/-141.335, 0's: 0 Z-trim: 6 B-trim: 3 in 1/39 Lambda= 0.053038 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1856 ( 1134 res) fh03203 (1134) 345 42.5 0.00064 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 279 init1: 190 opt: 345 Z-score: 162.2 bits: 42.5 E(): 0.00064 Smith-Waterman score: 470; 27.004% identity (51.911% similar) in 811 aa overlap (368-1129:45-795) 340 350 360 370 380 390 KIAA14 FGITDLPPGYLRPMAGLGFSLPSDVHSSNLEDP-ETMQTTAPGAQPEPTRTFLPGEPPPC : : : .: : :. : KIAA18 PSKITEPLREGPEEEPLAEREVKAEVEDMDEGPTELPPLESPLPLPAAEAMATPSPAGGC 20 30 40 50 60 70 400 410 420 430 440 450 KIAA14 SPRSLEEPGLLSGAREATQDLAATPYPAERGPQGKAADPSPLEGLQELQCAALLEAG--- . .: : ::.. .. . . : .: ::. .. .:. : :.: :. : KIAA18 GG-GLLEAQALSATGQSCAEPSECPDFVE-GPEPRVDSPGRTE-----PCTAALDLGVQL 80 90 100 110 120 460 470 480 490 500 KIAA14 GPEATGQAHSTQ-----GGAREERSREEGEQGPSSGASSQVLEQRAGSPGALEDEGEQPA ::. .:. : : ::: . . :. .::. . : ::. :. KIAA18 TPETLVEAKEEPVEVPVGVPVVEAVPEEGLAQVAPSESQPTLEMSDCDVPA--GEGQCPS 130 140 150 160 170 180 510 520 530 540 550 560 KIAA14 PEEDELEEDELGQQS-MEDSEEDCGGAPDNSHPPRALPGLDALVAATINLGDLPSDSPPD : .: ::. .:.. : :. : : :..::.:: ..::. . : KIAA18 LEPQE-AVPVLGSTCFLEEASSD-QFLPSLEDP---LAGMNALAAA----AELPQ-ARPL 190 200 210 220 230 570 580 590 600 610 620 KIAA14 PQPPAASGPPSTVPLP-------HSSGIHGIALLSELADLAIQRQRSERTVPEEEEDVLA :.: :: : . : ..: .:::.::::.:.: ..: ::.. :. : KIAA18 PSPGAA-GAQALEKLEAAESLVLEQSFLHGITLLSEIAELELER-RSQEMGGAERALVAR 240 250 260 270 280 290 630 640 650 660 670 680 KIAA14 FNLQHLATLATAWSLVEAAGLDSSTAPAQPPTANPCSGPRLTPRMQILQRKDTWTPKTKP .:. : ::.. ... . ::. :...: .. :: :: ..: .: : . KIAA18 PSLESL--LAAGSHMLREV-LDG-------PVVDPLKNLRL-PRELKPNKKYSWMRKKEE 300 310 320 330 340 690 700 710 720 730 KIAA14 -VCPLKAAIDRLDTQEVGMRVRLAELQRRYKEKQRELARLQRKHDHE--RDESSRSPARR . .:.... .:. :. .:.::::.::.::::::::..:::..: : :.: :: ::: KIAA18 RMYAMKSSLEDMDALELDFRMRLAEVQRQYKEKQRELVKLQRRRDSEDRREEPHRSLARR 350 360 370 380 390 400 740 750 760 770 780 790 KIAA14 GPGRPRKRKHS-SSLPAPRPTGPLPRSDGKKVKAVRTSLGLLCAE-LRGGSGGEPAKKRS :::::::: :. :.: :: : .:.:: .: .:: .. . :.: . .: : KIAA18 GPGRPRKRTHAPSALSPPRKRGKSGHSSGK-----LSSKSLLTSDDYELGAGIRKRHKGS 410 420 430 440 450 800 810 820 830 840 850 KIAA14 KLERSVYAGLQTASVEKAQCKKSSCQGGLAPSVAHRVAQLKPKVKSKGLPTGLSSFQQKE . :... :. ::. .... . : : ..::: : :. ..: :.. KIAA18 EEEHDALIGMG-----KARGRNQTWDEHEASS--DFISQLKIKKKK------MASDQEQL 460 470 480 490 500 860 870 880 890 900 KIAA14 ATPGGRIREKLSRAKSAKVSGATRHPQPKGHGSRETPRC-----PAQPSVAASQEA---G :. .. . :: .:. :... . . : :. . : : . .. ...: : KIAA18 AS---KLDKALSLTKQDKLKSPFKFSDSAGGKSKTSGGCGRYLTPYDSLLGKNRKALAKG 510 520 530 540 550 560 910 920 930 940 950 960 KIAA14 SGYDSEDC-EGLLGTEAPPREAGLLLHA-GASVAVLGPSPSSVVKMEANQKAKKKKE--- : . .. :: : :. . ..: : .. .: : : .. : ... .: KIAA18 LGLSLKSSREGKHKRAAKTRKMEVGFKARGQPKSAHSPFASEVSSYSYNTDSEEDEEFLK 570 580 590 600 610 620 970 980 990 1000 1010 KIAA14 ----RQGLLGACRLSSPESEVKIKRRSVKAKVGTTLERAPGQRPPGALGKKKAKGKAKGS :: .. .:. : .. .. :: : : . : : .: : : .. . KIAA18 DEWPAQGP-SSSKLT-PSLLCSMVAKNSKAAGGPKLTKR-GLAAPRTLKPKPATSRKQPF 630 640 650 660 670 1020 1030 1040 1050 1060 1070 KIAA14 ---LR-AEPGATPSRDALFNPSRAFACREEGSQLASERLKRATRKGTVLQPVLRRKNGAL :: :: .. : .. . .. . .:: . :. .:. : : : . .: KIAA18 CLLLREAEARSSFSDSSEESFDQDESSEEEDEEEELEEEDEASGGGYRLGARERALSPGL 680 690 700 710 720 730 1080 1090 1100 1110 1120 KIAA14 ---SITLATRNAKAILGK---GRKLSKVKHKAGKQGKGRAVSRLLESFAVEEDFEFDDNS .. : .: : . : . : .:: :. .: .... . . : . .::. :. KIAA18 EESGLGLLARFAASALPSPTVGPSLSVVQLEAKQKARKKEERQSL----LGTEFEYTDSE 740 750 760 770 780 790 1130 1140 1150 1160 1170 1180 KIAA14 SFSEEEEDEEEEEEDSGPLSAEQSAALARSCAIHKEDLRDGLPVLIPKEDSLLYAGSVRT : KIAA18 SEVKVRKRSPAGLLRPKKGLGEPGPSLAAPTPGARGPDPSSPDKAKLAVEKGRKARKLRG 800 810 820 830 840 850 1721 residues in 1 query sequences 1985784 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:50 2008 done: Thu Dec 18 15:22:51 2008 Total Scan time: 0.950 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]