hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02505045/chunk_1/iprscan-20080502-02505045.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1437 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 110.8 1.5e-28 8 SM00365 32.8 4.8e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/8 591 614 .. 1 24 [] 14.5 7 SM00365 1/3 614 635 .. 1 22 [] 13.7 17 SM00369 2/8 615 637 .. 1 24 [] 0.4 3.7e+02 SM00369 3/8 639 661 .. 1 24 [] 5.9 79 SM00365 2/3 662 693 .. 1 22 [] 13.6 18 SM00369 4/8 662 685 .. 1 24 [] 31.4 0.00012 SM00369 5/8 686 707 .. 1 24 [] 12.2 14 SM00369 6/8 708 731 .. 1 24 [] 23.6 0.028 SM00369 7/8 732 752 .. 1 24 [] 2.4 2.1e+02 SM00365 3/3 754 774 .. 1 22 [] 5.5 1.7e+02 SM00369 8/8 754 777 .. 1 24 [] 20.5 0.24 Alignments of top-scoring domains: SM00369: domain 1 of 8, from 591 to 614: score 14.5, E = 7 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + nL+eL L + L+++P+ +F+ KIAA1437 591 MANLTELELIRCDLERIPHSIFSL 614 SM00365: domain 1 of 3, from 614 to 635: score 13.7, E = 17 *->LtnLeeLdLsqNkIkkiENLde<-* L+nL+e+dL +N +k iE + KIAA1437 614 LHNLQEIDLKDNNLKTIEEIIS 635 SM00369: domain 2 of 8, from 615 to 637: score 0.4, E = 3.7e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +nL+e dL +N+L+++ + + KIAA1437 615 -HNLQEIDLKDNNLKTIEEIISFQ 637 SM00369: domain 3 of 8, from 639 to 661: score 5.9, E = 79 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+ L L +N++ +P ++ ++ KIAA1437 639 LHRLTCLKLWYNHIAYIPIQI-GN 661 SM00365: domain 2 of 3, from 662 to 693: score 13.6, E = 18 *->LtnLeeLdLsqNkI..........kkiENLde<-* LtnLe L+L+ NkI++ +++ +k+ Ld KIAA1437 662 LTNLERLYLNRNKIekiptqlfycRKLRYLDL 693 SM00369: domain 4 of 8, from 662 to 685: score 31.4, E = 0.00012 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL++L+L++N+++ +P ++F + KIAA1437 662 LTNLERLYLNRNKIEKIPTQLFYC 685 SM00369: domain 5 of 8, from 686 to 707: score 12.2, E = 14 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++Lr LdLs+N+Lt LP+++ + KIAA1437 686 -RKLRYLDLSHNNLTFLPADI-GL 707 SM00369: domain 6 of 8, from 708 to 731: score 23.6, E = 0.028 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L N++++LPp++Fq+ KIAA1437 708 LQNLQNLAITANRIETLPPELFQC 731 SM00369: domain 7 of 8, from 732 to 752: score 2.4, E = 2.1e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++Lr L+L+nN L+sLP+++ g KIAA1437 732 -RKLRALHLGNNVLQSLPSRV--G 752 SM00365: domain 3 of 3, from 754 to 774: score 5.5, E = 1.7e+02 *->LtnLeeLdLsqNkIkkiENLde<-* LtnL+ ++L++N+++++ ++ KIAA1437 754 LTNLTQIELRGNRLECL-PVEL 774 SM00369: domain 8 of 8, from 754 to 777: score 20.5, E = 0.24 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL+ L +N+L+ LP ++ ++ KIAA1437 754 LTNLTQIELRGNRLECLPVELGEC 777 //