hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02491005/chunk_1/iprscan-20080502-02491005.nocrc
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Query sequence: KIAA1436
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00409 171.8 6.8e-47 6
SM00406 46.3 4e-09 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00409 1/6 73 186 .. 1 58 [] 40.9 1.7e-07
SM00406 1/3 83 166 .. 1 76 [] 36.9 2.6e-06
SM00409 2/6 199 315 .. 1 58 [] 26.6 0.0035
SM00409 3/6 329 435 .. 1 58 [] 38.1 1.2e-06
SM00406 2/3 339 420 .. 1 76 [] 8.1 0.45
SM00409 4/6 459 577 .. 1 58 [] 24.3 0.017
SM00406 3/3 469 562 .. 1 76 [] 1.3 2.2
SM00409 5/6 601 721 .. 1 58 [] 20.2 0.29
SM00409 6/6 741 867 .. 1 58 [] 21.7 0.1
Alignments of top-scoring domains:
SM00409: domain 1 of 6, from 73 to 186: score 40.9, E = 1.7e-07
*->pp.vtvkeGesvtLtC.as........titWy...............
+++ ++G ++++C++s+ ++++ ++ W+ ++ +++ ++
KIAA1436 73 TAtLVRVVGTELVIPCnVSdydgpseqNFDWSfsslgssfvelastw 119
.............................LtI.nvtpeDsesgGtYtCaa
+ + + + + +++ +++ ++ L+I+nv+p+D+ G Y C
KIAA1436 120 evgfpaqlyqerlqrgeillrrtandaveLHIkNVQPSDQ---GHYKCST 166
t......sgsasseqgttLtVl<-*
+++ + g+++ +++++Vl
KIAA1436 167 PstdatvQGNYED--TVQVKVL 186
SM00406: domain 1 of 3, from 83 to 166: score 36.9, E = 2.6e-06
*->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy.......
+ ++C +S ++ ++++++ W + + + +e+ + + + +
KIAA1436 83 ELVIPCNVSDYDGpseqNFDWSFSSL----GSSFVELASTwevgfpa 125
.sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
+ y++R++ l r+++ v L+i+n++p+D+g Y C++
KIAA1436 126 qLYQERLQRGEILLRRTANDAVELHIKNVQPSDQGHYKCST 166
SM00409: domain 2 of 6, from 199 to 315: score 26.6, E = 0.0035
*->pp.vtvkeGesvtLtC.as.........titWy..............
pp+++ +eGe+ +L+C+a++ ++ +++ + W ++++ +++ +
KIAA1436 199 PPsLSLREGEPFELRCtAAsasplhthlALLWEvhrgparrsvlalt 245
...............................LtI.nvtpeDsesgGtYtC
+ ++ +++ + ++ ++++ + ++ +++ +L ++++ +D+ G Y+C
KIAA1436 246 hegrfhpglgyeqryhsgdvrldtvgsdayrLSVsRALSADQ---GSYRC 292
aat.......sgsasseqgttLtVl<-*
++ ++ + + + ++V
KIAA1436 293 IVSewiaeqgNWQEIQ--EKAVEVA 315
SM00409: domain 3 of 6, from 329 to 435: score 38.1, E = 1.2e-06
*->pp.vtvkeGesvtLtC.as.........titWy..............
p++v+v eG + LtC+++++ ++ +++tW+ ++ ++++ ++++
KIAA1436 329 PKnVSVAEGKELDLTCnITtdraddvrpEVTWSfsrmpdstlpgsrv 375
...........................LtI.nvtpeDsesgGtYtCaat.
+ ++++ +++++ ++ + ++ +L +++v++e+s G Y+C ++
KIAA1436 376 larldrdslvhssphvalshvdarsyhLLVrDVSKENS---GYYYCHVSl 422
sgsasseqgttLtVl<-*
+ ++ + +V
KIAA1436 423 WAPGHN--RSWHKVA 435
SM00406: domain 2 of 3, from 339 to 420: score 8.1, E = 0.45
*->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
+ L+C +++ ++ +++ ++s+ r p ++ g +l++ +++
KIAA1436 339 ELDLTCNITTDRAddvrpevTWSFSRMPD---STLPGSRVLARldrd 382
...sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
+ ++ v +s + ++ +L +++ e +g+YyC +
KIAA1436 383 slvHSSPHVALSHV-----DARSYHLLVRDVSKENSGYYYCHV 420
SM00409: domain 4 of 6, from 459 to 577: score 24.3, E = 0.017
*->pp.vtvkeGesvtLtC.as...........titWy............
++v + + ++ +L C++ +++++ + t++Wy + ++++++ +
KIAA1436 459 ASkVPGFADDPTELACrVVdtksgeanvrfTVSWYyrmnrrsdnvvt 505
.......................................LtI.nvtpeDs
+ +++ + + + +++++ ++++ ++ ++++ +++I++ t+eD
KIAA1436 506 sellavmdgdwtlkygerskqraqdgdfifskehtdtfnFRIqRTTEEDR 555
esgGtYtCaat.sgsasseqgttLtVl<-*
G+Y+C+++ + ++ + +++ +
KIAA1436 556 ---GNYYCVVSaWTKQRN--NSWVKSK 577
SM00406: domain 3 of 3, from 469 to 562: score 1.3, E = 2.2
*->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
+L C++ ++++ + + +vsW++ + ++ + e+l++ +++
KIAA1436 469 PTELACRVVDTKSgeanvrfTVSWYYRMNRRSDNVVTSELLAVmdgd 515
............sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyC
+ + +++++++ g + +sk ++ ++i++ + eD g+YyC
KIAA1436 516 wtlkygerskqrAQDGDFIFSKE-----HTDTFNFRIQRTTEEDRGNYYC 560
ar<-*
+
KIAA1436 561 VV 562
SM00409: domain 5 of 6, from 601 to 721: score 20.2, E = 0.29
*->pp.vtvkeGesvtLtC.as.......titWy................
+p+ +G + ++tC++s+++ ++++++ + ++ ++ ++++ +
KIAA1436 601 QPkPFFAAGNTFEMTCkVSsknikspRYSVLimaekpvgdlsspnet 647
.....................................LtI.nvtpeDses
+ + ++++ + + ++ ++ ++ + + + + ++ + +++D+
KIAA1436 648 kyiisldqdsvvklenwtdasrvdgvvlekvqedefrYRMyQTQVSDA-- 695
gGtYtCaat.....sgsasseqgttLtVl<-*
G Y+C++t ++ gs + ++ + +
KIAA1436 696 -GLYRCMVTawspvRGSLWR--EAATSLS 721
SM00409: domain 6 of 6, from 741 to 867: score 21.7, E = 0.1
*->pp.vtvkeGesvtLtC.as.............titWy..........
+ + +v +G+ ++L C ++ + ++++ ++W+ ++ + ++
KIAA1436 741 SDtPSVIRGDLIKLFCiITvegaaldpddmafDVSWFavhsfgldka 787
...................................LtI.nvtpeDsesgG
+ ++ ++++ ++++++ +++ + + + L++++ + +D G
KIAA1436 788 pvllssldrkgivttsrrdwksdlslervsvleflLQVhGSEDQDF---G 834
tYtCaat............sgsasseqgttLtVl<-*
+Y+C +t+ ++++++ + +++s +++ +tV+
KIAA1436 835 NYYCSVTpwvksptgswqkEAEIHS-KPVFITVK 867
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