# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh02770.fasta.huge -Q ../query/KIAA1427.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1427, 439 aa vs ./tmplib.24314 library 1987066 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.2426+/- 0.006; mu= 14.1212+/- 0.408 mean_var=131.8339+/-30.974, 0's: 0 Z-trim: 6 B-trim: 2 in 1/39 Lambda= 0.111702 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0080 ( 486 res) hh13320 ( 486) 412 77.4 2.1e-15 KIAA1342 ( 426 res) fj00418 ( 426) 389 73.6 2.6e-14 KIAA0985 ( 697 res) hj08038 ( 697) 222 47.0 4.4e-06 >>KIAA0080 ( 486 res) hh13320 (486 aa) initn: 404 init1: 168 opt: 412 Z-score: 368.3 bits: 77.4 E(): 2.1e-15 Smith-Waterman score: 412; 25.747% identity (56.552% similar) in 435 aa overlap (19-437:70-483) 10 20 30 40 KIAA14 AAAGPSPSPGAGTMVLSVPVIALGATLGTATSILALC-GVTCL---CR ::.: . .:. :.:..: .:: . : KIAA00 LSYHCKNVIATASDYDMAEITNIRPSFDVSPVVA--GLIGA--SVLVVCVSVTVFVWSCC 40 50 60 70 80 90 50 60 70 80 90 100 KIAA14 HMHPKKGLLPRDQDPDLEKAKPSLLGSAQQFNVKKSTEPVQPRALLKFPDIYGP-RPAVT :.. .: . ..: . .. . ... : . . . : :: : . KIAA00 HQQAEK----KHKNPPYK-----FIHMLKGISIYPETLSNKKKIIKVRRDKDGPGREGGR 100 110 120 130 140 110 120 130 140 150 160 KIAA14 APEVINYADYSLRSTE-EPTAPASPQPPNDSRLKRQVTEELFILPQNGVVEDVCVMETWN ... :. .: : . .: .:.: . .. .: . ::: : .... .: . KIAA00 RNLLVDAAEAGLLSRDKDPRGPSSGSCIDQLPIKMDYGEELRS-PITSLTPGES--KTTS 150 160 170 180 190 200 170 180 190 200 210 KIAA14 PEKAASWNQAPKLHYCLDYDCQKAELFVTRLEA----VTSNHDGGCDCYVQGSV-ANRTG : . . .: . .::. : : :: :: : ... : : :.. .. .. KIAA00 PSSPEEDVMLGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRH 210 220 230 240 250 260 220 230 240 250 260 270 KIAA14 SVEAQTALKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLD : .: . .. : ...: ... . .: .: . . . ::::: .: ::. . : KIAA00 RV--KTRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLA 270 280 290 300 310 320 280 290 300 310 320 330 KIAA14 GTSVPLGAAQWG-ELKTSAKEPSAGAGEVLLSISYLPAANRLLVVLIKAKNLHSNQSKEL :.. : .: .. . . ::. .:.:: :.:.:. ::..::..: . . : KIAA00 GVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGL 330 340 350 360 370 380 340 350 360 370 380 390 KIAA14 LGKDVSVKVTLKHQARKLKKKQTKRAKHKINPVWNEMIMFELPDDLLQASSVELEVLGQD :. :::.. . ... ::.:. : .::..:: .....: ::: :.:. :. : KIAA00 SGNPY-VKVNVYYGRKRIAKKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFD 390 400 410 420 430 440 400 410 420 430 KIAA14 DSGQSCALGHCSLGLHT---SGSERSHWEEMLKNPRRQIAMWHQLHL . .. ..:. :: :. ::.: ::.:. ..::. .: ::.: KIAA00 RTTKNEVVGRLILGAHSVTASGAE--HWREVCESPRKPVAKWHSLSEY 450 460 470 480 >>KIAA1342 ( 426 res) fj00418 (426 aa) initn: 352 init1: 231 opt: 389 Z-score: 348.9 bits: 73.6 E(): 2.6e-14 Smith-Waterman score: 389; 26.087% identity (58.551% similar) in 345 aa overlap (99-437:85-423) 70 80 90 100 110 120 KIAA14 LGSAQQFNVKKSTEPVQPRALLKFPDIYGPRPAVTAPEVINYADYSLRSTEEPTAPASPQ .::: :. . : :. . .. . KIAA13 VHVLKGVDIYPENLNSKKKFGADDKNEVKNKPAV--PKNSLHLDLEKRDLNGNFPKTNLK 60 70 80 90 100 110 130 140 150 160 170 180 KIAA14 PPNDSRLKRQVTEELFILPQNGVVEDVCVMETWNPEKAASWNQAPKLHYCLDYDCQKAEL : . : :. ..: .::. .. : . . . . . .. : . :.:. .. . KIAA13 PGSPSDLE-NATPKLFLEGEKESVSPESLKSSTSLTSEEKQEKLGTLFFSLEYNFERKAF 120 130 140 150 160 170 190 200 210 220 230 240 KIAA14 FVTRLEA----VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVL-PLA :. :: . .... : :.. .. . ...: . .. : ...: ... . KIAA13 VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH-KVKTRVLRKTLDPAFDETFTFYGIP 180 190 200 210 220 230 250 260 270 280 290 300 KIAA14 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWG-ELKTSAKEPSAGAG .. .: .:. . ::::: .. ::. . :.: . : . :. . :.: : KIAA13 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIKRNVRKSSGRG 240 250 260 270 280 290 310 320 330 340 350 360 KIAA14 EVLLSISYLPAANRLLVVLIKAKNLHSNQSKELLGKDVSVKVTLKHQARKLKKKQTKRAK :.:.:. : ..: : ::..::..: ... . : .: :::.: : ....::.:. : KIAA13 ELLISLCYQSTTNTLTVVVLKARHLPKSDVSGL--SDPYVKVNLYHAKKRISKKKTHVKK 300 310 320 330 340 370 380 390 400 410 420 KIAA14 HKINPVWNEMIMFELPDDLLQASSVELEVLGQDDSGQSCALGHCSLGLHTSGSERSHWEE : :.::...:..: . :. :::. :: .. .... ..:. :: . :. ::.: KIAA13 CTPNAVFNELFVFDIPCEGLEDISVEFLVLDSERGSRNEVIGQLVLGAAAEGTGGEHWKE 350 360 370 380 390 400 430 KIAA14 MLKNPRRQIAMWHQLHL . :::::: :: : KIAA13 ICDYPRRQIAKWHVLCDG 410 420 >>KIAA0985 ( 697 res) hj08038 (697 aa) initn: 299 init1: 197 opt: 222 Z-score: 201.2 bits: 47.0 E(): 4.4e-06 Smith-Waterman score: 263; 23.936% identity (52.128% similar) in 376 aa overlap (97-438:340-689) 70 80 90 100 110 120 KIAA14 SLLGSAQQFNVKKSTEPVQPRALLKFPDIYGPRPAVTAPE-VINYAD--YSLRSTEEPTA : ::: : : ... . :: :. : KIAA09 AGRFPDQKPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 310 320 330 340 350 360 130 140 150 160 170 180 KIAA14 PASPQPPNDSRLKRQVTEELFILPQNGVVEDVCVMETWNPEKAASWNQAPKLHYCLDYDC :. ::: :. :. .... ..:.. . :.. : :: KIAA09 AAARQPPP---------------PE----EEEEEANSYDSDEATTLGA---LEFSLLYDQ 370 380 390 400 190 200 210 220 230 KIAA14 QKAELFVTRLEAV---TSNHDGGCDCYVQGSV---ANRTGSVEAQTALKKRQLHTTWEEG ... : : ..: . .: : ::. . :.........: . : . :.: KIAA09 DNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR--NPIWNET 410 420 430 440 450 460 240 250 260 270 280 KIAA14 LVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS--------------VPL :: ...:.. :: ... :.:... :: :..: . .:. KIAA09 LVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIPM 470 480 490 500 510 520 290 300 310 320 330 KIAA14 ------GAAQWGELKTSAKEPSAGA----GEVLLSISYLPAANRLLVVLIKAKNLHSNQS :.:. : . .: :..:.:. : . :.: .:. .: . .. KIAA09 KRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDA 530 540 550 560 570 580 340 350 360 370 380 390 KIAA14 KELLGKDVSVKVTLKHQARKLKKKQTKRAKHKINPVWNEMIMFELPDDLLQASSVELEVL . .: ::. :: . : :..:. :. .:: .:: ..... . : .:... : KIAA09 NGY--SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW 590 600 610 620 630 640 400 410 420 430 KIAA14 GQDDSGQSCALGHCSLGLHTSGSERSHWEEMLKNPRRQIAMWHQLHL : . .. .: :.::. ..: . .:: : ::: ..: ::::. KIAA09 DYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD 650 660 670 680 690 439 residues in 1 query sequences 1987066 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:03 2008 done: Thu Dec 18 15:22:04 2008 Total Scan time: 0.420 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]