hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02134469/chunk_1/iprscan-20080502-02134469.nocrc
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Query sequence: KIAA1415
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00049                                                 201.7    6.6e-56   2
SM00325                                                 188.9    4.9e-52   1
SM00233                                                  53.0    3.8e-11   1
SM00228                                                  28.2     0.0012   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1      15   201 ..     1   211 []   188.9  4.9e-52
SM00233     1/1     234   356 ..     1    82 []    53.0  3.8e-11
SM00049     1/2     385   458 ..     1    90 []   105.0  8.4e-27
SM00049     2/2     486   559 ..     1    90 []    96.7  2.7e-24
SM00228     1/2     595   668 ..     1    80 []    21.9    0.088
SM00228     2/2     679   750 ..     1    80 []     6.3      4.7

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 15 to 201: score 188.9, E = 4.9e-52
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      vl+E+l TEr+YV +L+ l+  fl ++++ +  s  + l+++ vk l
    KIAA1415    15    VLNEILGTERDYVGTLRFLQSAFLHRIRQNVADSVEKGLTEENVKVL 61   

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ Nie+i+e+H++FL++Le+++   +              +s++++g+v
    KIAA1415    62 FS-NIEDILEVHKDFLAALEYCLHPEP--------------QSQHELGNV 96   

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   Flk+   ++ f +Y eYcsnh++al+ll +L   +k p +++fl  +++ 
    KIAA1415    97 FLKF---KDKFCVYEEYCSNHEKALRLLVEL---NKIPTVRAFLLSCMLL 140  

                   pncrsksea.rltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                      r   + ++ +Le +L+ P+QR++kYpLLLkel k tp  h+d+  ++
    KIAA1415   141 -GGR---KTtDIPLEGYLLSPIQRICKYPLLLKELAKRTPGKHPDHPAVQ 186  

                   kAleaikelasqvNe<-*
                    Al+a+k+++s +Ne   
    KIAA1415   187 SALQAMKTVCSNINE    201  

SM00233: domain 1 of 1, from 234 to 356: score 53.0, E = 3.8e-11
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk..............
                      ++++G+Llk s ++ ++r f+Lf++ L+y+k k++ +++++++++++
    KIAA1415   234    LLLQGTLLKISAgNIQERAFFLFDNLLVYCKRKsrvtgskkstkrtk 280  

                   .......kpkgsipLsgcsvre.p...............cFeivt.dr..
                   + +++    +g+i+ + ++v+  +++  + ++++    ++++i+++ +++
    KIAA1415   281 singslyIFRGRINTEVMEVENvEdgtadyhsngytvtnGWKIHNtAKnk 330  

                   tlllqAeseeereeWvealqsaiaka<-*
                    ++  A+++ee+++W++a+ +  ++    
    KIAA1415   331 WFVCMAKTAEEKQKWLDAIIREREQR    356  

SM00049: domain 1 of 2, from 385 to 458: score 105.0, E = 8.4e-27
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                       +++l++d r+++l+t+p+cF+G+e+V WLl+++e            
    KIAA1415   385    KKVNLIKD-RRRKLSTVPKCFLGNEFVAWLLEIGE------------ 418  

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                   i++ ee+v+lgqaLl++G ihhv+  +kh+Fk++ +++YrF+    
    KIAA1415   419 ISKTEEGVNLGQALLENGIIHHVS--DKHQFKNE-QVMYRFRY    458  

SM00049: domain 2 of 2, from 486 to 559: score 96.7, E = 2.7e-24
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                      +++++++d r+y+lkty+++  Gs lVdWLl +++            
    KIAA1415   486    LYTPVIKD-RDYHLKTYKSVLPGSKLVDWLLAQGD------------ 519  

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                   +++reeAv+lg  L+++G++hhv+   k  F+d+ ++++rF+    
    KIAA1415   520 CQTREEAVALGVGLCNNGFMHHVL--EKSEFRDE-SQYFRFHA    559  

SM00228: domain 1 of 2, from 595 to 668: score 21.9, E = 0.088
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      + +Gf i ++++ ++v+sv++Gs A+ aG      L+vG +I ++N 
    KIAA1415   595    EDYGFDIEEknkAVVVKSVQRGSLAEVAG------LQVGRKIYSINE 635  

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                      v   +  e+  +l ++  ++  ++++L+v  +    
    KIAA1415   636 -DLVFLRPFSEVESILNQSFCSR--RPLRLLVATKA    668  

SM00228: domain 2 of 2, from 679 to 750: score 6.3, E = 4.7
                   *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe
                        l f+i+g  + +v  v +Gs A  aG      L++G  Il+VNG 
    KIAA1415   679    DTLCFQIRGaaPPYVYAVGRGSEAMAAG------LCAGQCILKVNG- 718  

                   tsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    +v +    e+++  ++ + ++   +  L +       
    KIAA1415   719 SNVMNDGAPEVLEHFQAFRSRR---EEALGLYQWI    750  

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