hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02134469/chunk_1/iprscan-20080502-02134469.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1415 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 148.3 1.2e-43 1 PF00621.11.ls RhoGEF domain 150.1 5.5e-42 1 PF00610.11.ls Domain found in Dishevelled, Egl-10, and Ple 131.4 2.3e-36 2 PF00610.11.fs Domain found in Dishevelled, Egl-10, and Ple 129.1 1.2e-35 2 PF00169.19.fs PH domain 38.3 3.4e-11 1 PF00169.19.ls PH domain 40.3 6.1e-09 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 15.9 0.015 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.ls 1/1 15 201 .. 1 207 [] 150.1 5.5e-42 PF00621.11.fs 1/1 15 201 .. 1 207 [] 148.3 1.2e-43 PF00169.19.ls 1/1 234 354 .. 1 92 [] 40.3 6.1e-09 PF00169.19.fs 1/1 234 354 .. 1 92 [] 38.3 3.4e-11 PF00610.11.ls 1/2 383 456 .. 1 80 [] 70.8 4.1e-18 PF00610.11.fs 1/2 390 456 .. 7 80 .] 70.3 3e-18 PF00610.11.ls 2/2 485 557 .. 1 80 [] 60.7 4.6e-15 PF00610.11.fs 2/2 485 557 .. 1 80 [] 58.8 4e-15 PF00595.14.ls 1/1 588 665 .. 1 86 [] 15.9 0.015 Alignments of top-scoring domains: PF00621.11.ls: domain 1 of 1, from 15 to 201: score 150.1, E = 5.5e-42 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti vl+E+l TE+ Yv +L+ l+ ++ + r+ + s + Lt + ++ + KIAA1415 15 VLNEILGTERDYVGTLRFLQSAFLHRIRQNVADSvEKGLTEENVKVL 61 FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel FsNiedi+e+h++FL +Le +++ + +s+ lG +Fl++ KIAA1415 62 FSNIEDILEVHKDFLA-ALEYCLHPE----------PQSQHELGNVFLKF 100 kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk k+ f vY+eYcsn++ A ll l ++p ++ fl +++ + KIAA1415 101 KDKFC-VYEEYCSNHEKALRLLVELN---KIPTVRAFLLSCMLL----GG 142 ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald ++ L+ +Ll P+qRi++YpLLLkeL k tp +++++ + al+ KIAA1415 143 RKTTDIPLEGYLLSPIQRICKYPLLLKELAKRTPG--KHPDHPAVQSALQ 190 alqdlaksiNe<-* a++++ + iNe KIAA1415 191 AMKTVCSNINE 201 PF00621.11.fs: domain 1 of 1, from 15 to 201: score 148.3, E = 1.2e-43 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss.kplLtpddieti vl+E+l TE+ Yv +L+ l+ ++ + r+ + s + Lt + ++ + KIAA1415 15 VLNEILGTERDYVGTLRFLQSAFLHRIRQNVADSvEKGLTEENVKVL 61 FsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel FsNiedi+e+h++FL +Le +++ + +s+ lG +Fl++ KIAA1415 62 FSNIEDILEVHKDFLA-ALEYCLHPE----------PQSQHELGNVFLKF 100 kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAk k+ f vY+eYcsn++ A ll l ++p ++ fl +++ + KIAA1415 101 KDKFC-VYEEYCSNHEKALRLLVELN---KIPTVRAFLLSCMLL----GG 142 ddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkald ++ L+ +Ll P+qRi++YpLLLkeL k tp +++++ + al+ KIAA1415 143 RKTTDIPLEGYLLSPIQRICKYPLLLKELAKRTPG--KHPDHPAVQSALQ 190 alqdlaksiNe<-* a++++ + iNe KIAA1415 191 AMKTVCSNINE 201 PF00169.19.ls: domain 1 of 1, from 234 to 354: score 40.3, E = 6.1e-09 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk............ + +G Llk + ++ ++R f+Lfd+ L+y+k k++ ++++++++++ KIAA1415 234 LLLQGTLLKIS-AGNIQERAFFLFDNLLVYCKRKSrvtgskkstkrt 279 .......kkpkgsipLsgiqvtkvpdn.........krkncFeirt.dre ++ +++ + +g i+ + ++v+ v+d++ + ++++ n+++i+++ ++ KIAA1415 280 ksingslYIFRGRINTEVMEVENVEDGtadyhsngyTVTNGWKIHNtAKN 329 tlllq.aeseeerkeWvkaiqsair<-* +++++ a+++ee+++W++ai + KIAA1415 330 KWFVCmAKTAEEKQKWLDAIIRERE 354 PF00169.19.fs: domain 1 of 1, from 234 to 354: score 38.3, E = 3.4e-11 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk............ + +G Llk + ++ ++R f+Lfd+ L+y+k k++ ++++++++++ KIAA1415 234 LLLQGTLLKIS-AGNIQERAFFLFDNLLVYCKRKSrvtgskkstkrt 279 .......kkpkgsipLsgiqvtkvpdn.........krkncFeirt.dre ++ +++ + +g i+ + ++v+ v+d++ + ++++ n+++i+++ ++ KIAA1415 280 ksingslYIFRGRINTEVMEVENVEDGtadyhsngyTVTNGWKIHNtAKN 329 tlllq.aeseeerkeWvkaiqsair<-* +++++ a+++ee+++W++ai + KIAA1415 330 KWFVCmAKTAEEKQKWLDAIIRERE 354 PF00610.11.ls: domain 1 of 2, from 383 to 456: score 70.8, E = 4.1e-18 *->pesgvklk.drkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhl +++v l +dr+ +++++p+cF+G+e+V WL+++++ i +e+++l KIAA1415 383 MNKKVNLIkDRRRKLSTVPKCFLGNEFVAWLLEIGE-ISKTEEGVNL 428 aqlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* +q Ll+ G i+hv +++h+F q Yrf KIAA1415 429 GQALLENGIIHHV------SDKHQFKNEQVMYRF 456 PF00610.11.fs: domain 1 of 2, from 390 to 456: score 70.3, E = 3e-18 *->lkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhlaqlLlke +kdr+ +++++p+cF+G+e+V WL+++++ i +e+++l+q Ll+ KIAA1415 390 IKDRRRKLSTVPKCFLGNEFVAWLLEIGE-ISKTEEGVNLGQALLEN 435 GyirhvgdhltgkndhtFldkqtyYrf<-* G i+hv +++h+F q Yrf KIAA1415 436 GIIHHV------SDKHQFKNEQVMYRF 456 PF00610.11.ls: domain 2 of 2, from 485 to 557: score 60.7, E = 4.6e-15 *->pesgvklkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhla + +kdr +++k+++ + Gs lVdWL++ ++ ++r+eA+ l+ KIAA1415 485 SLYTPVIKDRDYHLKTYKSVLPGSKLVDWLLAQGD-CQTREEAVALG 530 qlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* L++ G+++hv + F+d + y+rf KIAA1415 531 VGLCNNGFMHHV------LEKSEFRDESQYFRF 557 PF00610.11.fs: domain 2 of 2, from 485 to 557: score 58.8, E = 4e-15 *->pesgvklkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhla + +kdr +++k+++ + Gs lVdWL++ ++ ++r+eA+ l+ KIAA1415 485 SLYTPVIKDRDYHLKTYKSVLPGSKLVDWLLAQGD-CQTREEAVALG 530 qlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* L++ G+++hv + F+d + y+rf KIAA1415 531 VGLCNNGFMHHV------LEKSEFRDESQYFRF 557 PF00595.14.ls: domain 1 of 1, from 588 to 665: score 15.9, E = 0.015 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +++l+ + + Gf i + ++ ++v++v++G + Ae++G L KIAA1415 588 LLILP---QEEDYGFDIEEKNK-----AVVVKSVQRG-SLAEVAG-L 624 qaGDqIlsvNG..qdlenlsheeavlalkgsggsevtLtvl<-* q+G +I s+N + + l+ +s+ e +l ++ ++++L+v+ KIAA1415 625 QVGRKIYSINEdlVFLRPFSEVESILNQSFCSRRPLRLLVA 665 //