hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01522896/chunk_1/iprscan-20080502-01522896.nocrc
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Query sequence: KIAA1404
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00438                                                  29.4    0.00049   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00438    1/5    1305  1331 ..     1    21 []    12.9       11
SM00438    2/5    1334  1353 ..     1    21 []     0.1  2.7e+02
SM00438    3/5    1389  1407 ..     1    21 []     0.6  2.4e+02
SM00438    4/5    1478  1495 ..     1    21 []    12.9       10
SM00438    5/5    1553  1571 ..     1    21 []     3.0  1.3e+02

Alignments of top-scoring domains:
SM00438: domain 1 of 5, from 1305 to 1331: score 12.9, E = 11
                   *->CGiHkCqklCHp.Gp......CpppCkq<-*
                      CG H C++ CHp   ++++ +C +pC++   
    KIAA1404  1305    CG-HVCTRACHPyDSshkefqCMKPCQK    1331 

SM00438: domain 2 of 5, from 1334 to 1353: score 0.1, E = 2.7e+02
                   *->CG.iHkCqklCHpGpCpppCkq<-*
                      C + H+C+ +C  ++C+p C++   
    KIAA1404  1334    CQeGHRCPLVC-FQECQP-CQV    1353 

SM00438: domain 3 of 5, from 1389 to 1407: score 0.6, E = 2.4e+02
                   *->CGiHkCqklCHpGpCpppCkq<-*
                      CG H+C+++C + +C   C +   
    KIAA1404  1389    CG-HRCSHPC-GEDCVQLCSE    1407 

SM00438: domain 4 of 5, from 1478 to 1495: score 12.9, E = 10
                   *->CGiHkCqklCHpGpCpppCkq<-*
                      C  HkCq++C  G+Cpp C++   
    KIAA1404  1478    CS-HKCQEPC-IGECPP-CQR    1495 

SM00438: domain 5 of 5, from 1553 to 1571: score 3.0, E = 1.3e+02
                   *->CGiHkCqklCHpGpCpppCkq<-*
                      CG H+C  lC + pCp++C+    
    KIAA1404  1553    CG-HPCIGLC-GEPCPKKCRI    1571 

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