# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh08938.fasta.huge -Q ../query/KIAA1390.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1390, 505 aa
 vs ./tmplib.24314 library

1987000 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.7411+/-0.00611; mu= 0.9579+/- 0.413
 mean_var=175.4404+/-42.505, 0's: 0 Z-trim: 2  B-trim: 24 in 1/39
 Lambda= 0.096830

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1164  ( 390 res)   hk00541                     ( 390) 1396 206.9 2.2e-54


>>KIAA1164  ( 390 res)   hk00541                          (390 aa)
 initn: 1388 init1: 1253 opt: 1396  Z-score: 1068.4  bits: 206.9 E(): 2.2e-54
Smith-Waterman score: 1419;  58.158% identity (77.895% similar) in 380 aa overlap (141-501:4-377)

              120       130       140       150       160       170
KIAA13 SAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTN
                                     . : :  . : .::: :: :.::::::. :
KIAA11                            AASKERFPGQSVYHIKWIQWKEENTPIITQNEN
                                          10        20        30   

              180       190       200       210       220       230
KIAA13 GPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNV
       ::::::::.:.:.: :::::::. :.::...:: .::. .:. ::.: ::  .::..::.
KIAA11 GPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNM
            40        50        60        70        80        90   

              240       250       260       270       280       290
KIAA13 DDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVG
       .:::..: :: ::::::::::::  ::::::: ::::: ::::::::::::  . :.:::
KIAA11 SDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDLLDIPLYHGWLVDPQIDDIVKAVG
           100       110       120       130       140       150   

              300       310       320       330       340       350
KIAA13 KLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVF
       . :::::::.::.::.:....::.::..:::::..::.:::::::::::....:::: ::
KIAA11 NCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTATQLTYHGLCELTSTVQEGELCVF
           160       170       180       190       200       210   

              360       370       380       390       400       410
KIAA13 FRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGP
       :::::::::::.:..::::::::::: ::.::::::::::::. ::::.:::       :
KIAA11 FRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLHNVDGDGNFCDSEFHLR------P
           220       230       240       250       260             

              420       430       440              450             
KIAA13 GAEGGSGSPEKQLQVDQDYLIALSLQQQQPRG-------PLGLTDLELAQQLQQEE----
        ..  .    .: :.:::::.::::::.:          : :..:::::..::.::    
KIAA11 PSDPETVYKGQQDQIDQDYLMALSLQQEQQSQEINWEQIPEGISDLELAKKLQEEEDRRA
       270       280       290       300       310       320       

       460       470       480           490         500           
KIAA13 --YQQQQAAQPVRMRTRVLSLQGRGA----TSGRPAG--ERRQRPKHESDCILL      
         : :.:    .   .   . ::. :    .::: .:  ::...  .:.:          
KIAA11 SQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSERKRKEPREKDKEKEKEKNSC
       330       340       350       360       370       380       

KIAA11 VIL
       390




505 residues in 1 query   sequences
1987000 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:22 2008 done: Thu Dec 18 15:20:23 2008
 Total Scan time:  0.450 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]