hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00363073/chunk_1/iprscan-20080502-00363073.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1358 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00706 352.0 3.7e-101 10 SM00693 198.7 5.3e-55 2 SM00694 118.0 1e-30 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00693 1/2 22 83 .. 1 73 [] 100.1 2.6e-25 SM00694 1/2 95 128 .. 1 42 [] 54.4 1.5e-11 SM00706 1/10 150 183 .. 1 43 [] 20.9 0.18 SM00706 2/10 192 228 .. 1 43 [] 46.0 5e-09 SM00706 3/10 237 275 .. 1 43 [] 47.8 1.4e-09 SM00706 4/10 284 319 .. 1 43 [] 44.3 1.6e-08 SM00706 5/10 664 703 .. 1 43 [] 28.7 0.00083 SM00706 6/10 719 753 .. 1 43 [] 35.3 8.2e-06 SM00693 2/2 774 835 .. 1 73 [] 98.6 7.1e-25 SM00694 2/2 846 879 .. 1 42 [] 63.6 2.4e-14 SM00706 7/10 893 927 .. 1 43 [] 18.5 0.94 SM00706 8/10 936 972 .. 1 43 [] 34.6 1.3e-05 SM00706 9/10 981 1018 .. 1 43 [] 48.5 8.7e-10 SM00706 10/10 1027 1062 .. 1 43 [] 27.4 0.0019 Alignments of top-scoring domains: SM00693: domain 1 of 2, from 22 to 83: score 100.1, E = 2.6e-25 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg pir+r+e+YEN +Rw+++gg+++++L++DR + +sD+sg+q++ p + KIAA1358 22 PIRRREEAYEN-QRWNPMGGFCEKLLLSDR-WGWSDVSGLQHR-PLD 65 rvelppdelecPspgWeWeddnWsld<-* rv+l Psp+WeWe+d W++d KIAA1358 66 RVAL-------PSPHWEWESD-WYVD 83 SM00694: domain 1 of 2, from 95 to 128: score 54.4, E = 1.5e-11 *->GWqYsdnfvfRkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GW+Y+++f pa+y+k++k++++ vRRR+W+R+rr+k KIAA1358 95 GWTYAIDF-----PATYTKDKKWNSC---VRRRKWIRYRRYK 128 SM00706: domain 1 of 10, from 150 to 183: score 20.9, E = 0.18 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ++ + + +e++ vg+ +VWav+ +g++++R+ KIAA1358 150 NDLSVGG---------WEITEEPVGRLSVWAVSLQGKVWYRED 183 SM00706: domain 2 of 10, from 192 to 228: score 46.0, E = 5e-09 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* ssW++++tp ge++q+s+gp+d +Wa + g++++R+g KIAA1358 192 SSWSLLDTP-------GEVVQISCGPhDLLWATLWEGQALVREG 228 SM00706: domain 3 of 10, from 237 to 275: score 47.8, E = 1.4e-09 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ssW++v++p+ s+++++++svg +VWav++d+++++R+g KIAA1358 237 SSWSIVEPPG----SENGVMHISVGVSVVWAVTKDWKVWFRRG 275 SM00706: domain 4 of 10, from 284 to 319: score 44.3, E = 1.6e-08 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavns.dgniyrRtg<- sW+++ ge+++v vg +d+VW+++++d+ +y+R+g KIAA1358 284 TSWIEMV---------GEMTMVNVGMnDQVWGIGCeDRAVYFRQG 319 * KIAA1358 - - SM00706: domain 5 of 10, from 664 to 703: score 28.7, E = 0.00083 *->ssWtqvptpqkgslsggelkqvsvgp..deVWavnsdgniyrRtg<- ++W + sls++e ++v p+++++W +++ g+i++ + KIAA1358 664 NDWLALL-----SLSCCESRKVQGRPspQAIWSITCKGDIFVSEP 703 * KIAA1358 - - SM00706: domain 6 of 10, from 719 to 753: score 35.3, E = 8.2e-06 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* + W+q++ g+l++v + +++VW+++ d+ ++++tg KIAA1358 719 MFWRQMG---------GHLRMVEANSrGVVWGIGYDHTAWVYTG 753 SM00693: domain 2 of 2, from 774 to 835: score 98.6, E = 7.1e-25 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg ++++++YEN +Rw++v+g++++gLp+DR +++sDasg+qe+ + KIAA1358 774 SDVKCVHIYEN-QRWNPVTGYTSRGLPTDR-YMWSDASGLQEC---T 815 rvelppdelecPspgWeWeddnWsld<-* + ++p Ps++W+W++d W++d KIAA1358 816 KAGTKP-----PSLQWAWVSD-WFVD 835 SM00694: domain 2 of 2, from 846 to 879: score 63.6, E = 2.4e-14 *->GWqYsdnfvfRkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GWqY+++f pa+yh+ ++m+df vRRR+W R+++l+ KIAA1358 846 GWQYASDF-----PASYHGSKTMKDF---VRRRCWARKCKLV 879 SM00706: domain 7 of 10, from 893 to 927: score 18.5, E = 0.94 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* ++ +++p + g++ ++Wav+ g++++R g KIAA1358 893 RDVSIIP---------ESPGAEGSGHsIALWAVSDKGDVLCRLG 927 SM00706: domain 8 of 10, from 936 to 972: score 34.6, E = 1.3e-05 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavnsdgniyrRtg<-* ssW +v+t+q ++ ++s g+ +VWav +dg +++R KIAA1358 936 SSWLHVGTDQ-------PFASISIGAcYQVWAVARDGSAFYRGS 972 SM00706: domain 9 of 10, from 981 to 1018: score 48.5, E = 8.7e-10 *->ssWtqvptpqkgslsggelkqvsvgpdeVWavnsdgniyrRtg<-* ++W+++p+p+ + +lkqvs+g+ +V+a++ +gn+++R+g KIAA1358 981 DCWYHIPSPP-----RQRLKQVSAGQTSVYALDENGNLWYRQG 1018 SM00706: domain 10 of 10, from 1027 to 1062: score 27.4, E = 0.0019 *->ssWtqvptpqkgslsggelkqvsvgp.deVWavns.dgniyrRtg<- ssW++v+ + ++ vsvgp d+VW++ ++ + + +++ KIAA1358 1027 SSWEHVS---------NNVCRVSVGPlDQVWVIANkVQGSHSLSR 1062 * KIAA1358 - - //