# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj01906.fasta.huge -Q ../query/KIAA1357.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1357, 836 aa vs ./tmplib.24314 library 1986669 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 16.1885+/-0.0135; mu= -37.6711+/- 0.910 mean_var=789.4014+/-188.931, 0's: 0 Z-trim: 25 B-trim: 8 in 1/39 Lambda= 0.045648 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1522 ( 1044 res) fh14706(revised) (1044) 390 41.3 0.00065 KIAA1172 ( 929 res) hj03919(revised) ( 929) 351 38.7 0.0035 >>KIAA1522 ( 1044 res) fh14706(revised) (1044 aa) initn: 268 init1: 130 opt: 390 Z-score: 162.2 bits: 41.3 E(): 0.00065 Smith-Waterman score: 476; 30.282% identity (46.831% similar) in 568 aa overlap (23-482:484-1020) 10 20 30 40 50 KIAA13 SVKSEYTDPWGYYIDYTGMQEDPGNPAGGCSTSSGV-PTGNGPVRHVQEGSR : :. : : ..:. : .:. : KIAA15 THSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGLS 460 470 480 490 500 510 60 70 80 90 100 110 KIAA13 ATMPQVPGGSVKPKIMSPEKSHRVISPSSGYSSQSNTPTALTPVPVFLKSVSPANGKGKP :::: .: :.. .:..::::::::::.::: : : . ..: . :: KIAA15 ------PGGSRRP----PRSPERTLSPSSGYSSQSGTPT-LPPKGL----AGPPASPGKA 520 530 540 550 120 130 140 150 KIAA13 KPKVPERKSSLIS-SVSISSSSTSLSSSTS----TEGSGT--MKKL-DPAVGSP----PA .: ::: .:: : ..:.::: ::: ::.: .. :: . : : : : :: KIAA15 QPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPA 560 570 580 590 600 610 160 170 180 190 200 210 KIAA13 P--PPPPVPSPPFPC-PADRSP-FLPPPPPVTDCS-QGSPLPHSPVFP----PPPPEALI : ::: : : : :: .: .: : .:: : :. : :.. . : : . KIAA15 PFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQS 620 630 640 650 660 670 220 230 240 250 260 KIAA13 PFCSPPDWCLSPPRPALSP-ILPDSPVSL-----PLPPPLLPSSEPPPAPPLDPKFMKDT : ::: :: :. .: .. ..: . :: : : ::::: . : : KIAA15 PPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPP-PPPAPEEQDLSMADF 680 690 700 710 720 730 270 280 290 KIAA13 RPP----FT--------NSGQPE--------SSRGS---LRPPSTKEETSRPPMP----- :: :. ::.:: :: .. ..::.. . :: : KIAA15 PPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASS 740 750 760 770 780 790 300 310 320 KIAA13 ------------------------------LITTEALQMVQLRPVRKNSGAEAAQLSERT :.: ::::.:: : .:: . :. . KIAA15 APGHVAKLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSA 800 810 820 830 840 850 330 340 350 360 370 KIAA13 AQE--------QRTPV-APQYHLKPSAFLKSRN-STNEMESESQPASVTSSLPTPAKSS- :. . .:: ::. :. .. ::. . ...: : .:: . . : : .: KIAA15 PQKPLRRALSGRASPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNGPPEAEPRPPQSPA 860 870 880 890 900 910 380 390 400 410 420 KIAA13 -------SQGDHGSAAERGGPVSRSPGAPSAGE--AEARPSPSTTP--LPDSSPSRKPPP :.:.. :: ::: : . :: : : : .:: . ::: KIAA15 STASFIFSKGSRKLQLER--PVSPETQADLQRNLVAELRSISEQRPPQAPKKSP-KAPPP 920 930 940 950 960 970 430 440 450 460 470 480 KIAA13 ISKKPKLFLVVPPPQKDFAVEPAENVSEALRAVPSPTTGEEGSVHSREAKESSAAQAGSH ...::.. :::: . :. .: : : :. .: :... . :. : KIAA15 VARKPSVG--VPPPAS-----PSYPRAEPLTAPPT-----NGLPHTQDRTKRELAENGGV 980 990 1000 1010 1020 490 500 510 520 530 540 KIAA13 ATHPGTSVLEGGAAGSMSPSRVEANVPMVQPDVSPAPKQEEPAENSADTGGDGESCLSQQ KIAA15 LQLVGPEEKMGLPGSDSQKELA 1030 1040 >>KIAA1172 ( 929 res) hj03919(revised) (929 aa) initn: 329 init1: 142 opt: 351 Z-score: 149.0 bits: 38.7 E(): 0.0035 Smith-Waterman score: 379; 30.380% identity (50.633% similar) in 316 aa overlap (158-432:461-765) 130 140 150 160 170 180 KIAA13 ISSSSTSLSSSTSTEGSGTMKKLDPAVGSPPAPPPPPVPSPPFPCPADRSPFLPPPPPVT : : : ::: ::.: :: :. ::: : KIAA11 NPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPA---PITVPPPQVP 440 450 460 470 480 190 200 210 220 230 KIAA13 DCSQGSPLP---HSPVFPPP---PPEALIPFCSPPDWCLSPP---RPALSPI-LPDSPVS . : :. . :.: :: :: .. : :: :: ::...:. :: : KIAA11 PHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPP---PPPPFLRPGFNPMHLP--PGF 490 500 510 520 530 540 240 250 260 270 280 290 KIAA13 LPL--PPPLLPS-SEPPP-APPLD-PKFMKDTRPPFTNSGQPESSRGSLRPPSTKEETSR :: :::. : : ::: .::.. :.... .: ..::. . :: ::.. . KIAA11 LPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGN-AESGDSVKMYGSAVPPAAPTNLPT 550 560 570 580 590 600 300 310 320 330 340 KIAA13 PPMPL-ITTEALQMVQLRPVRKNSGAEAAQLSERTA--QEQRTPVAPQYHLKPSAFLKSR ::. .. . : : :: .. .. :. : . :: : : ::. .. : KIAA11 PPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPR 610 620 630 640 650 660 350 360 370 380 390 400 KIAA13 NSTNEMESESQPASVTSSLPTPAKSSSQGD---HGSAAERGG-PVSRSPGAPSAGEAEAR .: .. : . ... : . .: :: .. :: : .:: :. : : : KIAA11 PMPPHMMHRGPPPG-PGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPG-PGPGGPEDR 670 680 690 700 710 410 420 430 440 KIAA13 ------PS-PSTTPLPDSS------------PSRKPPPISKKPKLFLVVPPPQKDFAVEP :. :. : :.. ::..::: ...:. : KIAA11 DGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQ 720 730 740 750 760 770 450 460 470 480 490 500 KIAA13 AENVSEALRAVPSPTTGEEGSVHSREAKESSAAQAGSHATHPGTSVLEGGAAGSMSPSRV KIAA11 ERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERNRRSSGHR 780 790 800 810 820 830 836 residues in 1 query sequences 1986669 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:06 2008 done: Thu Dec 18 15:19:06 2008 Total Scan time: 0.630 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]