hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00331297/chunk_1/iprscan-20080502-00331297.nocrc
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Query sequence: KIAA1356
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.ls Ion transport protein                         224.2    2.7e-64   1
PF00520.21.fs Ion transport protein                         222.3    9.8e-64   1
PF00612.17.ls IQ calmodulin-binding motif                    19.0      0.016   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/1      79   289 ..     1   224 []   222.3  9.8e-64
PF00520.21.ls   1/1      79   289 ..     1   224 []   224.2  2.7e-64
PF00612.17.ls   1/1     420   440 ..     1    21 []    19.0    0.016

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 1, from 79 to 289: score 222.3, E = 9.8e-64
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +++vf+v+Ft E++lk+++l+        ++Y++ +wNi+Df+vv+
    KIAA1356    79    RINLVFIVLFTGEFVLKLVSLR--------HYYFTIGWNIFDFVVVI 117  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +s+++++l+++ +                ++ +sp+l++v+rl R+ R  
    KIAA1356   118 LSIVGMFLAEMIE----------------KYfVSPTLFRVIRLARIGR-- 149  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +lrli++a+g     +rtl  l++l++sl++l+n++lll+l++fi+ai+
    KIAA1356   150 -ILRLIKGAKG-----IRTL--LFALMMSLPALFNIGLLLFLVMFIYAIF 191  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl.
                   g+  F +++++   +i++ +nF++fgn++++lFq+ T+ Gw ++++ +l+
    KIAA1356   192 GMSNFAYVKKEA--GIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILn 239  

                   .....................agtvlgyiyfvsfiilgsflllNLfiavi
                   + +++ ++++ +++++ +++ ++  +g+++fvs+ii++ ++++N++iavi
    KIAA1356   240 sappdcdpdtihpgssvkgdcGNPSVGIFFFVSYIIISFLVVVNMYIAVI 289  

                   <-*
                      
    KIAA1356     -     -    

PF00520.21.ls: domain 1 of 1, from 79 to 289: score 224.2, E = 2.7e-64
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +++vf+v+Ft E++lk+++l+        ++Y++ +wNi+Df+vv+
    KIAA1356    79    RINLVFIVLFTGEFVLKLVSLR--------HYYFTIGWNIFDFVVVI 117  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +s+++++l+++ +                ++ +sp+l++v+rl R+ R  
    KIAA1356   118 LSIVGMFLAEMIE----------------KYfVSPTLFRVIRLARIGR-- 149  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +lrli++a+g     +rtl  l++l++sl++l+n++lll+l++fi+ai+
    KIAA1356   150 -ILRLIKGAKG-----IRTL--LFALMMSLPALFNIGLLLFLVMFIYAIF 191  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl.
                   g+  F +++++   +i++ +nF++fgn++++lFq+ T+ Gw ++++ +l+
    KIAA1356   192 GMSNFAYVKKEA--GIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILn 239  

                   .....................agtvlgyiyfvsfiilgsflllNLfiavi
                   + +++ ++++ +++++ +++ ++  +g+++fvs+ii++ ++++N++iavi
    KIAA1356   240 sappdcdpdtihpgssvkgdcGNPSVGIFFFVSYIIISFLVVVNMYIAVI 289  

                   <-*
                      
    KIAA1356     -     -    

PF00612.17.ls: domain 1 of 1, from 420 to 440: score 19.0, E = 0.016
                   *->rraaikIQaawRGylaRkryk<-*
                      + +a +IQ+ +R+yl ++r+k   
    KIAA1356   420    EVSAAIIQRNFRCYLLKQRLK    440  

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