hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00263724/chunk_1/iprscan-20080502-00263724.nocrc
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Query sequence: KIAA1352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00395 leuS_arch: leucyl-tRNA synthetase            1173.9          0   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00395   1/1      50  1098 ..     1  1109 []  1173.9        0

Alignments of top-scoring domains:
TIGR00395: domain 1 of 1, from 50 to 1098: score 1173.9, E = 0
                   *->iaIEkKWQKrWeeakIFEaDAPSiEDEPiTPDdrELHRTYPKFFlTv
                      + IEk  Q  W  ++ FE +A  +E       ++       K F+T 
    KIAA1352    50    KKIEKEIQQKWDTERVFEVNASNLEK----QTSKG------KYFVTF 86   

                   AYPYlNGvlHAGHlRTfTipevvARFeRMkGkNVLFPlGfHVTGtPIlGl
                   +YPY+NG lH GH++ +++ e+ ++++R kGk  LFP+G H+TG+PI ++
    KIAA1352    87 PYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKAC 136  

                   AelIkrrDEkTikvYtevHaEEEEiKEETPAEKDHEDVTKFKAKKSKAAA
                   A+++kr+ E+ +      ++EEEE  E      D     K K KKSKAAA
    KIAA1352   137 ADKLKREIELYGCP-PDFPDEEEEEEETSVKTEDIIIKDKAKGKKSKAAA 185  

                   KKGRGKYQFEimLQLGvPrEELlkltdPEyIVEYFSreaesalksmGySI
                   K G  KYQ+ im  LG   EE++k++ +E ++ YF+++a ++lk+mG  +
    KIAA1352   186 KAGSSKYQWGIMKSLGLSDEEIVKFSEAEHWLDYFPPLAIQDLKRMGLKV 235  

                   DWRReFkTTDANpvYdrFIeWQirKLKelGLIvKGeHPVrYCPkdeNPVe
                   DWRR+F TTD Np+Yd F++WQ+  L+e  +I++G ++++Y+Pkd++P++
    KIAA1352   236 DWRRSFITTDVNPYYDSFVRWQFLTLRERNKIKFGKRYTIYSPKDGQPCM 285  

                   DHDlLsGEgvTivEyiliKFkleDgaDDAAKiiDSSSDLD..KSKKlyfv
                   DHD++ GEgv ++Ey+l+K k ++            S L + K K +++v
    KIAA1352   286 DHDRQTGEGVGPQEYTLLKLKVLEP---------YPSKLSglKGKNIFLV 326  

                   aATLRPETvyGvTNvWVnPditYViaevggEkEtEnGiELiEnGiWIvsk
                   aATLRPET++G+TN+WV Pd  Y  +e+                i+I + 
    KIAA1352   327 AATLRPETMFGQTNCWVRPDMKYIGFETVNGD------------IFICTQ 364  

                   eAvenLsyQklkPKRGFlkvieeVdgkqlIGkkVknPQvv.gkEvPILPA
                   +A+ n+syQ  +   G + v+ e  g+   G    +P ++++k + +LP+
    KIAA1352   365 KAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAP-LTsYKVIYVLPM 413  

                   eFVdtekgTGVVmSVPAHAPaDyIAleDLkrdeEllekYGiikdvVedIe
                    +++ +kgTGVV+SVP+ +P+D +Al+DLk++  l +kYGi  d V   e
    KIAA1352   414 LTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFE 463  

                   pvplIkvdgYGdlPAkeivEelGvkSQkDknlLeeAtKelYKeEyhtGvM
                   pvp+I ++g G l A  i  el+++SQ D+++L+eA+ ++Y + ++ G+M
    KIAA1352   464 PVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIM 513  

                   ienildYkGmKVsEAKekvkeDLidkGLAdvmYEFsEkpVICRCGtkCvV
                   +      kG KV   K  +++ +id+G A ++ E+ Ek+V++R+ + CvV
    KIAA1352   514 LVD--GFKGQKVQDVKKTIQKKMIDAGDALIYMEP-EKQVMSRSSDECVV 560  

                   kvveDQWFvkYSdesWKelAheCLegMriIPeevkeaFeekIDWLkDwAC
                     + DQW+++Y++e WK++  +CL     + ee + +Fe  + WL   AC
    KIAA1352   561 A-LCDQWYLDYGEENWKKQTSQCLKNLETFCEETRRNFEATLGWLQEHAC 609  

                   aRRkGLGTRlPWDEkWlIESLSDSTIYmAYYTiAkylnkddl..gnEiGP
                   +R++GLGT lPWDE+WlIESLSDSTIYmA+YT+A++l  ++l++ +E  P
    KIAA1352   610 SRTYGLGTHLPWDEQWLIESLSDSTIYMAFYTVAHLLQGGNLhgQAE-SP 658  

                   LGiSADqMTdEfFDYiFLgkgdVdKvAkntniplelieklReEFeYwYPl
                   LGi   qMT E+ DY+F            t i +e + +l +EFe wYP+
    KIAA1352   659 LGIRPQQMTKEVWDYVFFKEAPF----PKTQIAKEKLDQLKQEFEFWYPV 704  

                   DwRiSgKDLIpNHLTFyIFhHVAIFPe..kfWPRGIvVNGyvlLEGkKMS
                   D+R+SgKDL+pNHL  y+++HVA+ Pe++++WP ++++NG++lL+  KMS
    KIAA1352   705 DLRVSGKDLVPNHLSYYLYNHVAMWPEqsDKWPTAVRANGHLLLNSEKMS 754  

                   KSKGnvltlkeavEKfGADVaRlyildaAElvqDADwkesEvegtkkrLe
                   KS+Gn+ltl +a+ Kf AD  Rl+++da+++v+DA++ e  + + ++rL 
    KIAA1352   755 KSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVEAMADAGILRLY 804  

                   rlyefaeEitkksdGRPvLlEvGPAEelsfi.DrWllsrlnkaIkevtEa
                      e+++E     d     l+ G   + s+++Dr + s+ln+ I +++  
    KIAA1352   805 TWVEWVKEMVANWD----SLRSG---PASTFnDRVFASELNAGIIKTDQN 847  

                   menfqtRkAvkaaLfdLkaDvdwYrr.RgGenvkDEvKsvLArvLetwIk
                   +e +  + A+k ++f+++a+ d Yr+ +++++++     +  r++e++ +
    KIAA1352   848 YEKMMFKEALKTGFFEFQAAKDKYRElAVEGMHRE----LVFRFIEVQTL 893  

                   LlAPFaPHlaEEmWeevLGkegfVslAkfPeaseeavdkevekaEEYLrN
                   LlAPF PHl+E +W ++ Gk  ++ +A++P +  + v++       YL  
    KIAA1352   894 LLAPFCPHLCEHIWTLL-GKPDSIMNASWP-VAGP-VNEVLIHSSQYLME 940  

                   lvrDIqEGEGQALKKKK..GKIakivas...kPkrvylytseSFPdWKve
                   +  D +      LK    + K +k ++ + +kP   ++y +  +P W+  
    KIAA1352   941 VTHDLRL----RLKNYMmpAKGKKTDKQplqKPSHCTIYVAKNYPPWQHT 986  

                   vlkvvaElegedvgei..MkkvmeHi..eeelrKrgKEvaelVkqiikde
                    l v ++ +    g ++++k +   +++ +el+K++K v  +V  i  ++
    KIAA1352   987 TLSVLRKHFEANNGKLpdNKVIASELgsMPELKKYMKKVMPFVAMIKENL 1036 

                   kked..VFERvlvisEieVLkaAaefikkEvGakvIieskadsfPenKkr
                    k  +++ +  l ++E  VL+++  ++ +   ++ I    ++ f  ++  
    KIAA1352  1037 EKMGprILDLQLEFDEKAVLMENIVYLTNSLELEHI----EVKFASEAED 1082 

                   GKDiFTGEEVEiPPVTKiVEnAVPgKPAIYle<-*
                                   Ki E   PgKP  ++    
    KIAA1352  1083 ----------------KIREDCCPGKPLNVFR    1098 

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