hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00263724/chunk_1/iprscan-20080502-00263724.nocrc
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Query sequence: KIAA1352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF08264.3.fs Anticodon-binding domain                    70.1    2.5e-19   1
PF08264.3.ls Anticodon-binding domain                    71.9    1.9e-18   1
PF09334.1.fs tRNA synthetases class I (M)                33.1    2.5e-10   2
PF00133.12.fs tRNA synthetases class I (I, L, M and V)    21.2    6.7e-06   3
PF01406.10.fs tRNA synthetases class I (C) catalytic d    19.2    1.7e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF09334.1.fs   2/2     737   791 ..   341   397 ..    25.3  6.4e-08
PF01406.10.fs   1/1     743   782 ..   378   417 ..    19.2  1.7e-05
PF08264.3.fs   1/1     830   966 ..     1   176 []    70.1  2.5e-19
PF08264.3.ls   1/1     830   966 ..     1   176 []    71.9  1.9e-18

Alignments of top-scoring domains:
PF09334.1.fs: domain 2 of 2, from 737 to 791: score 25.3, E = 6.4e-08
                   *->PtqvfaHGwltveGgKMSKSrGnvVdpdelldrGygvDaLRYYLlrK
                      Pt+v a+G+l+++ +KMSKS Gn+    +++d+ + +D++R  L+  
    KIAA1352   737    PTAVRANGHLLLNSEKMSKSTGNFLTLTQAIDK-FSADGMRLALAD- 781  

                   eapegkDgdF<-*
                   ++    D++F   
    KIAA1352   782 AGDTVEDANF    791  

PF01406.10.fs: domain 1 of 1, from 743 to 782: score 19.2, E = 1.7e-05
                   *->nGhvmiegEKMSKSLGNFltirDvLkkydpevLRyfllsa<-*
                      nGh+  + EKMSKS GNFlt   ++ k+++   R++l+ a   
    KIAA1352   743    NGHLLLNSEKMSKSTGNFLTLTQAIDKFSADGMRLALADA    782  

PF08264.3.fs: domain 1 of 1, from 830 to 966: score 70.1, E = 2.5e-19
                   *->DrWiLsrLnelikevteayenYdFnkAaralyeFiwndlcdwYlels
                      Dr + s+Ln+ i +++++ye+  F +A+++ +  + ++  d Y el+
    KIAA1352   830    DRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEF-QAAKDKYRELA 875  

                   KdrlygeeeegeGsaadddkseapakraAqttLyevLeallrLLaPfmPF
                    + +  e                          ++++e+ + LLaPf+P+
    KIAA1352   876 VEGMHRE------------------------LVFRFIEVQTLLLAPFCPH 901  

                   itEEiWqrLpgeeeSvhladwPvdelevdgfdeakewelidlekleaeme
                   ++E iW  L++ ++S++ a+wP          +      ++ e l    +
    KIAA1352   902 LCEHIWTLLGK-PDSIMNASWP------V---A----GPVN-EVLIHSSQ 936  

                   llkevikaiRslRaeknikpsl.plkvliv<-*
                   +l+ev+ ++R   +++ ++ + ++ +       
    KIAA1352   937 YLMEVTHDLRLRLKNYMMPAKGkKTDKQPL    966  

PF08264.3.ls: domain 1 of 1, from 830 to 966: score 71.9, E = 1.9e-18
                   *->DrWiLsrLnelikevteayenYdFnkAaralyeFiwndlcdwYlels
                      Dr + s+Ln+ i +++++ye+  F +A+++ +  + ++  d Y el+
    KIAA1352   830    DRVFASELNAGIIKTDQNYEKMMFKEALKTGFFEF-QAAKDKYRELA 875  

                   KdrlygeeeegeGsaadddkseapakraAqttLyevLeallrLLaPfmPF
                    + +  e                          ++++e+ + LLaPf+P+
    KIAA1352   876 VEGMHRE------------------------LVFRFIEVQTLLLAPFCPH 901  

                   itEEiWqrLpgeeeSvhladwPvdelevdgfdeakewelidlekleaeme
                   ++E iW  L++ ++S++ a+wP          +      ++ e l    +
    KIAA1352   902 LCEHIWTLLGK-PDSIMNASWP------V---A----GPVN-EVLIHSSQ 936  

                   llkevikaiRslRaeknikpsl.plkvliv<-*
                   +l+ev+ ++R   +++ ++ + ++ +       
    KIAA1352   937 YLMEVTHDLRLRLKNYMMPAKGkKTDKQPL    966  

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