# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj01313.fasta.huge -Q ../query/KIAA1352.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1352, 1212 aa
 vs ./tmplib.24314 library

1986293 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.6879+/-0.00493; mu= 18.2715+/- 0.335
 mean_var=81.2546+/-19.526, 0's: 0 Z-trim: 1  B-trim: 150 in 1/39
 Lambda= 0.142282

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0028  ( 904 res)   ha00560                     ( 904)  161 43.6 0.00016


>>KIAA0028  ( 904 res)   ha00560                          (904 aa)
 initn: 295 init1: 114 opt: 161  Z-score: 172.9  bits: 43.6 E(): 0.00016
Smith-Waterman score: 161;  26.374% identity (59.341% similar) in 91 aa overlap (47-137:51-140)

         20        30        40        50        60        70      
KIAA13 SFVEVARVIVVDLHSRLGGAMAERKGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQ
                                     ..  . .:... ::  .:. :  ..  : .
KIAA00 NGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVE-KWWHQRIKEQASKISEAD
               30        40        50        60         70         

         80        90       100       110       120       130      
KIAA13 TSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKAC
        :: :..:   .:: .:.::.::.   .  .  . .:...:   . :.:    :.: .  
KIAA00 KSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENA
      80        90       100       110       120       130         

        140       150       160       170       180       190      
KIAA13 ADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGI
       :                                                           
KIAA00 AVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGLA
     140       150       160       170       180       190         




1212 residues in 1 query   sequences
1986293 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:54 2008 done: Thu Dec 18 15:18:54 2008
 Total Scan time:  0.730 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]